Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India

We performed targeted genome sequencing of 11 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) samples collected from asymptomatic individuals. These nasopharyngeal and oropharyngeal samples were collected during the first wave of coronavirus disease 2019 (COVID-19) in Karnataka, India....

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Autores principales: Rangaiah, Ambica, Shankar, Sathyanarayan Muthur, Padukone, Shashiraja, Rangappa, Kusuma Gowdra, Basawarajappa, Shantala Gowdara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Genome Sequences
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8793731/
https://www.ncbi.nlm.nih.gov/pubmed/35084216
http://dx.doi.org/10.1128/MRA.00850-21
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author Rangaiah, Ambica
Shankar, Sathyanarayan Muthur
Padukone, Shashiraja
Rangappa, Kusuma Gowdra
Basawarajappa, Shantala Gowdara
author_facet Rangaiah, Ambica
Shankar, Sathyanarayan Muthur
Padukone, Shashiraja
Rangappa, Kusuma Gowdra
Basawarajappa, Shantala Gowdara
author_sort Rangaiah, Ambica
collection PubMed
description We performed targeted genome sequencing of 11 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) samples collected from asymptomatic individuals. These nasopharyngeal and oropharyngeal samples were collected during the first wave of coronavirus disease 2019 (COVID-19) in Karnataka, India. Nine strains were found to be Nextstrain clade 20B (PANGO lineage B.1.1.519, GISAID clade GR), and two were identified as clade 20A (PANGO lineage B.1.619, GISAID clade G). The spike protein mutation D614G was observed across all the sequenced strains.
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spelling pubmed-87937312022-02-01 Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India Rangaiah, Ambica Shankar, Sathyanarayan Muthur Padukone, Shashiraja Rangappa, Kusuma Gowdra Basawarajappa, Shantala Gowdara Microbiol Resour Announc Genome Sequences We performed targeted genome sequencing of 11 severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) samples collected from asymptomatic individuals. These nasopharyngeal and oropharyngeal samples were collected during the first wave of coronavirus disease 2019 (COVID-19) in Karnataka, India. Nine strains were found to be Nextstrain clade 20B (PANGO lineage B.1.1.519, GISAID clade GR), and two were identified as clade 20A (PANGO lineage B.1.619, GISAID clade G). The spike protein mutation D614G was observed across all the sequenced strains. American Society for Microbiology 2022-01-27 /pmc/articles/PMC8793731/ /pubmed/35084216 http://dx.doi.org/10.1128/MRA.00850-21 Text en Copyright © 2022 Rangaiah et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Rangaiah, Ambica
Shankar, Sathyanarayan Muthur
Padukone, Shashiraja
Rangappa, Kusuma Gowdra
Basawarajappa, Shantala Gowdara
Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India
title Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India
title_full Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India
title_fullStr Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India
title_full_unstemmed Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India
title_short Whole-Genome Sequencing of SARS-CoV-2 Strains from Asymptomatic Individuals in India
title_sort whole-genome sequencing of sars-cov-2 strains from asymptomatic individuals in india
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8793731/
https://www.ncbi.nlm.nih.gov/pubmed/35084216
http://dx.doi.org/10.1128/MRA.00850-21
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