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Automated image analysis to assess hygienic behaviour of honeybees

Focus of this study is to design an automated image processing pipeline for handling uncontrolled acquisition conditions of images acquired in the field. The pipeline has been tested on the automated identification and count of uncapped brood cells in honeybee (Apis Mellifera) comb images to reduce...

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Autores principales: Paolillo, Gianluigi, Petrini, Alessandro, Casiraghi, Elena, De Iorio, Maria Grazia, Biffani, Stefano, Pagnacco, Giulio, Minozzi, Giulietta, Valentini, Giorgio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8794212/
https://www.ncbi.nlm.nih.gov/pubmed/35085372
http://dx.doi.org/10.1371/journal.pone.0263183
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author Paolillo, Gianluigi
Petrini, Alessandro
Casiraghi, Elena
De Iorio, Maria Grazia
Biffani, Stefano
Pagnacco, Giulio
Minozzi, Giulietta
Valentini, Giorgio
author_facet Paolillo, Gianluigi
Petrini, Alessandro
Casiraghi, Elena
De Iorio, Maria Grazia
Biffani, Stefano
Pagnacco, Giulio
Minozzi, Giulietta
Valentini, Giorgio
author_sort Paolillo, Gianluigi
collection PubMed
description Focus of this study is to design an automated image processing pipeline for handling uncontrolled acquisition conditions of images acquired in the field. The pipeline has been tested on the automated identification and count of uncapped brood cells in honeybee (Apis Mellifera) comb images to reduce the workload of beekeepers during the study of the hygienic behavior of honeybee colonies. The images used to develop and test the model were acquired by beekeepers on different days and hours in summer 2020 and under uncontrolled conditions. This resulted in images differing for background noise, illumination, color, comb tilts, scaling, and comb sizes. All the available 127 images were manually cropped to approximately include the comb area. To obtain an unbiased evaluation, the cropped images were randomly split into a training image set (50 images), which was used to develop and tune the proposed model, and a test image set (77 images), which was solely used to test the model. To reduce the effects of varied illuminations or exposures, three image enhancement algorithms were tested and compared followed by the Hough Transform, which allowed identifying individual cells to be automatically counted. All the algorithm parameters were automatically chosen on the training set by grid search. When applied to the 77 test images the model obtained a correlation of 0.819 between the automated counts and the experts’ counts. To provide an assessment of our model with publicly available images acquired by a different equipment and under different acquisition conditions, we randomly extracted 100 images from a comb image dataset made available by a recent literature work. Though it has been acquired under controlled exposure, the images in this new set have varied illuminations; anyhow, our pipeline obtains a correlation between automatic and manual counts equal to 0.997. In conclusion, our tests on the automatic count of uncapped honey bee comb cells acquired in the field and on images extracted from a publicly available dataset suggest that the hereby generated pipeline successfully handles varied noise artifacts, illumination, and exposure conditions, therefore allowing to generalize our method to different acquisition settings. Results further improve when the acquisition conditions are controlled.
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spelling pubmed-87942122022-01-28 Automated image analysis to assess hygienic behaviour of honeybees Paolillo, Gianluigi Petrini, Alessandro Casiraghi, Elena De Iorio, Maria Grazia Biffani, Stefano Pagnacco, Giulio Minozzi, Giulietta Valentini, Giorgio PLoS One Research Article Focus of this study is to design an automated image processing pipeline for handling uncontrolled acquisition conditions of images acquired in the field. The pipeline has been tested on the automated identification and count of uncapped brood cells in honeybee (Apis Mellifera) comb images to reduce the workload of beekeepers during the study of the hygienic behavior of honeybee colonies. The images used to develop and test the model were acquired by beekeepers on different days and hours in summer 2020 and under uncontrolled conditions. This resulted in images differing for background noise, illumination, color, comb tilts, scaling, and comb sizes. All the available 127 images were manually cropped to approximately include the comb area. To obtain an unbiased evaluation, the cropped images were randomly split into a training image set (50 images), which was used to develop and tune the proposed model, and a test image set (77 images), which was solely used to test the model. To reduce the effects of varied illuminations or exposures, three image enhancement algorithms were tested and compared followed by the Hough Transform, which allowed identifying individual cells to be automatically counted. All the algorithm parameters were automatically chosen on the training set by grid search. When applied to the 77 test images the model obtained a correlation of 0.819 between the automated counts and the experts’ counts. To provide an assessment of our model with publicly available images acquired by a different equipment and under different acquisition conditions, we randomly extracted 100 images from a comb image dataset made available by a recent literature work. Though it has been acquired under controlled exposure, the images in this new set have varied illuminations; anyhow, our pipeline obtains a correlation between automatic and manual counts equal to 0.997. In conclusion, our tests on the automatic count of uncapped honey bee comb cells acquired in the field and on images extracted from a publicly available dataset suggest that the hereby generated pipeline successfully handles varied noise artifacts, illumination, and exposure conditions, therefore allowing to generalize our method to different acquisition settings. Results further improve when the acquisition conditions are controlled. Public Library of Science 2022-01-27 /pmc/articles/PMC8794212/ /pubmed/35085372 http://dx.doi.org/10.1371/journal.pone.0263183 Text en © 2022 Paolillo et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Paolillo, Gianluigi
Petrini, Alessandro
Casiraghi, Elena
De Iorio, Maria Grazia
Biffani, Stefano
Pagnacco, Giulio
Minozzi, Giulietta
Valentini, Giorgio
Automated image analysis to assess hygienic behaviour of honeybees
title Automated image analysis to assess hygienic behaviour of honeybees
title_full Automated image analysis to assess hygienic behaviour of honeybees
title_fullStr Automated image analysis to assess hygienic behaviour of honeybees
title_full_unstemmed Automated image analysis to assess hygienic behaviour of honeybees
title_short Automated image analysis to assess hygienic behaviour of honeybees
title_sort automated image analysis to assess hygienic behaviour of honeybees
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8794212/
https://www.ncbi.nlm.nih.gov/pubmed/35085372
http://dx.doi.org/10.1371/journal.pone.0263183
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