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Standards recommendations for the Earth BioGenome Project

A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer...

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Autores principales: Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Marques Bonet, Tomas, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Di Palma, Federica, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J., Liu, Xin, Lopez, Jose Victor, Myers, Eugene W., Pettersson, Olga Vinnere, Phillippy, Adam M., Poelchau, Monica F., Pruitt, Kim D., Rhie, Arang, Castilla-Rubio, Juan Carlos, Sahu, Sunil Kumar, Salmon, Nicholas A., Soltis, Pamela S., Swarbreck, David, Thibaud-Nissen, Françoise, Wang, Sibo, Wegrzyn, Jill L., Zhang, Guojie, Zhang, He, Lewin, Harris A., Richards, Stephen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795494/
https://www.ncbi.nlm.nih.gov/pubmed/35042802
http://dx.doi.org/10.1073/pnas.2115639118
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author Lawniczak, Mara K. N.
Durbin, Richard
Flicek, Paul
Lindblad-Toh, Kerstin
Wei, Xiaofeng
Archibald, John M.
Baker, William J.
Belov, Katherine
Blaxter, Mark L.
Marques Bonet, Tomas
Childers, Anna K.
Coddington, Jonathan A.
Crandall, Keith A.
Crawford, Andrew J.
Davey, Robert P.
Di Palma, Federica
Fang, Qi
Haerty, Wilfried
Hall, Neil
Hoff, Katharina J.
Howe, Kerstin
Jarvis, Erich D.
Johnson, Warren E.
Johnson, Rebecca N.
Kersey, Paul J.
Liu, Xin
Lopez, Jose Victor
Myers, Eugene W.
Pettersson, Olga Vinnere
Phillippy, Adam M.
Poelchau, Monica F.
Pruitt, Kim D.
Rhie, Arang
Castilla-Rubio, Juan Carlos
Sahu, Sunil Kumar
Salmon, Nicholas A.
Soltis, Pamela S.
Swarbreck, David
Thibaud-Nissen, Françoise
Wang, Sibo
Wegrzyn, Jill L.
Zhang, Guojie
Zhang, He
Lewin, Harris A.
Richards, Stephen
author_facet Lawniczak, Mara K. N.
Durbin, Richard
Flicek, Paul
Lindblad-Toh, Kerstin
Wei, Xiaofeng
Archibald, John M.
Baker, William J.
Belov, Katherine
Blaxter, Mark L.
Marques Bonet, Tomas
Childers, Anna K.
Coddington, Jonathan A.
Crandall, Keith A.
Crawford, Andrew J.
Davey, Robert P.
Di Palma, Federica
Fang, Qi
Haerty, Wilfried
Hall, Neil
Hoff, Katharina J.
Howe, Kerstin
Jarvis, Erich D.
Johnson, Warren E.
Johnson, Rebecca N.
Kersey, Paul J.
Liu, Xin
Lopez, Jose Victor
Myers, Eugene W.
Pettersson, Olga Vinnere
Phillippy, Adam M.
Poelchau, Monica F.
Pruitt, Kim D.
Rhie, Arang
Castilla-Rubio, Juan Carlos
Sahu, Sunil Kumar
Salmon, Nicholas A.
Soltis, Pamela S.
Swarbreck, David
Thibaud-Nissen, Françoise
Wang, Sibo
Wegrzyn, Jill L.
Zhang, Guojie
Zhang, He
Lewin, Harris A.
Richards, Stephen
author_sort Lawniczak, Mara K. N.
collection PubMed
description A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.
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spelling pubmed-87954942022-02-03 Standards recommendations for the Earth BioGenome Project Lawniczak, Mara K. N. Durbin, Richard Flicek, Paul Lindblad-Toh, Kerstin Wei, Xiaofeng Archibald, John M. Baker, William J. Belov, Katherine Blaxter, Mark L. Marques Bonet, Tomas Childers, Anna K. Coddington, Jonathan A. Crandall, Keith A. Crawford, Andrew J. Davey, Robert P. Di Palma, Federica Fang, Qi Haerty, Wilfried Hall, Neil Hoff, Katharina J. Howe, Kerstin Jarvis, Erich D. Johnson, Warren E. Johnson, Rebecca N. Kersey, Paul J. Liu, Xin Lopez, Jose Victor Myers, Eugene W. Pettersson, Olga Vinnere Phillippy, Adam M. Poelchau, Monica F. Pruitt, Kim D. Rhie, Arang Castilla-Rubio, Juan Carlos Sahu, Sunil Kumar Salmon, Nicholas A. Soltis, Pamela S. Swarbreck, David Thibaud-Nissen, Françoise Wang, Sibo Wegrzyn, Jill L. Zhang, Guojie Zhang, He Lewin, Harris A. Richards, Stephen Proc Natl Acad Sci U S A The Earth BioGenome Project: The Launch of a Moonshot for Biology A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met. National Academy of Sciences 2022-01-18 2022-01-25 /pmc/articles/PMC8795494/ /pubmed/35042802 http://dx.doi.org/10.1073/pnas.2115639118 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle The Earth BioGenome Project: The Launch of a Moonshot for Biology
Lawniczak, Mara K. N.
Durbin, Richard
Flicek, Paul
Lindblad-Toh, Kerstin
Wei, Xiaofeng
Archibald, John M.
Baker, William J.
Belov, Katherine
Blaxter, Mark L.
Marques Bonet, Tomas
Childers, Anna K.
Coddington, Jonathan A.
Crandall, Keith A.
Crawford, Andrew J.
Davey, Robert P.
Di Palma, Federica
Fang, Qi
Haerty, Wilfried
Hall, Neil
Hoff, Katharina J.
Howe, Kerstin
Jarvis, Erich D.
Johnson, Warren E.
Johnson, Rebecca N.
Kersey, Paul J.
Liu, Xin
Lopez, Jose Victor
Myers, Eugene W.
Pettersson, Olga Vinnere
Phillippy, Adam M.
Poelchau, Monica F.
Pruitt, Kim D.
Rhie, Arang
Castilla-Rubio, Juan Carlos
Sahu, Sunil Kumar
Salmon, Nicholas A.
Soltis, Pamela S.
Swarbreck, David
Thibaud-Nissen, Françoise
Wang, Sibo
Wegrzyn, Jill L.
Zhang, Guojie
Zhang, He
Lewin, Harris A.
Richards, Stephen
Standards recommendations for the Earth BioGenome Project
title Standards recommendations for the Earth BioGenome Project
title_full Standards recommendations for the Earth BioGenome Project
title_fullStr Standards recommendations for the Earth BioGenome Project
title_full_unstemmed Standards recommendations for the Earth BioGenome Project
title_short Standards recommendations for the Earth BioGenome Project
title_sort standards recommendations for the earth biogenome project
topic The Earth BioGenome Project: The Launch of a Moonshot for Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795494/
https://www.ncbi.nlm.nih.gov/pubmed/35042802
http://dx.doi.org/10.1073/pnas.2115639118
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