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Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR

NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment...

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Autores principales: Klein, Alexander, Rovó, Petra, Sakhrani, Varun V., Wang, Yangyang, Holmes, Jacob B., Liu, Viktoriia, Skowronek, Patricia, Kukuk, Laura, Vasa, Suresh K., Güntert, Peter, Mueller, Leonard J., Linser, Rasmus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795498/
https://www.ncbi.nlm.nih.gov/pubmed/35058365
http://dx.doi.org/10.1073/pnas.2114690119
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author Klein, Alexander
Rovó, Petra
Sakhrani, Varun V.
Wang, Yangyang
Holmes, Jacob B.
Liu, Viktoriia
Skowronek, Patricia
Kukuk, Laura
Vasa, Suresh K.
Güntert, Peter
Mueller, Leonard J.
Linser, Rasmus
author_facet Klein, Alexander
Rovó, Petra
Sakhrani, Varun V.
Wang, Yangyang
Holmes, Jacob B.
Liu, Viktoriia
Skowronek, Patricia
Kukuk, Laura
Vasa, Suresh K.
Güntert, Peter
Mueller, Leonard J.
Linser, Rasmus
author_sort Klein, Alexander
collection PubMed
description NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment of backbone resonances, which becomes a bottleneck for molecular weights beyond 40 to 45 kDa. Here, we show that assignments for the (2x)72-kDa protein tryptophan synthase (665 amino acids per asymmetric unit) can be achieved via higher-dimensional, proton-detected, solid-state NMR using a single, 1-mg, uniformly labeled, microcrystalline sample. This framework grants access to atom-specific characterization of chemical properties and relaxation for the backbone and side chains, including those residues important for the catalytic turnover. Combined with first-principles calculations, the chemical shifts in the β-subunit active site suggest a connection between active-site chemistry, the electrostatic environment, and catalytically important dynamics of the portal to the β-subunit from solution.
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spelling pubmed-87954982022-02-03 Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR Klein, Alexander Rovó, Petra Sakhrani, Varun V. Wang, Yangyang Holmes, Jacob B. Liu, Viktoriia Skowronek, Patricia Kukuk, Laura Vasa, Suresh K. Güntert, Peter Mueller, Leonard J. Linser, Rasmus Proc Natl Acad Sci U S A Biological Sciences NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment of backbone resonances, which becomes a bottleneck for molecular weights beyond 40 to 45 kDa. Here, we show that assignments for the (2x)72-kDa protein tryptophan synthase (665 amino acids per asymmetric unit) can be achieved via higher-dimensional, proton-detected, solid-state NMR using a single, 1-mg, uniformly labeled, microcrystalline sample. This framework grants access to atom-specific characterization of chemical properties and relaxation for the backbone and side chains, including those residues important for the catalytic turnover. Combined with first-principles calculations, the chemical shifts in the β-subunit active site suggest a connection between active-site chemistry, the electrostatic environment, and catalytically important dynamics of the portal to the β-subunit from solution. National Academy of Sciences 2022-01-20 2022-01-25 /pmc/articles/PMC8795498/ /pubmed/35058365 http://dx.doi.org/10.1073/pnas.2114690119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Biological Sciences
Klein, Alexander
Rovó, Petra
Sakhrani, Varun V.
Wang, Yangyang
Holmes, Jacob B.
Liu, Viktoriia
Skowronek, Patricia
Kukuk, Laura
Vasa, Suresh K.
Güntert, Peter
Mueller, Leonard J.
Linser, Rasmus
Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
title Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
title_full Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
title_fullStr Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
title_full_unstemmed Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
title_short Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
title_sort atomic-resolution chemical characterization of (2x)72-kda tryptophan synthase via four- and five-dimensional (1)h-detected solid-state nmr
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795498/
https://www.ncbi.nlm.nih.gov/pubmed/35058365
http://dx.doi.org/10.1073/pnas.2114690119
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