Cargando…
Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR
NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795498/ https://www.ncbi.nlm.nih.gov/pubmed/35058365 http://dx.doi.org/10.1073/pnas.2114690119 |
_version_ | 1784641078846029824 |
---|---|
author | Klein, Alexander Rovó, Petra Sakhrani, Varun V. Wang, Yangyang Holmes, Jacob B. Liu, Viktoriia Skowronek, Patricia Kukuk, Laura Vasa, Suresh K. Güntert, Peter Mueller, Leonard J. Linser, Rasmus |
author_facet | Klein, Alexander Rovó, Petra Sakhrani, Varun V. Wang, Yangyang Holmes, Jacob B. Liu, Viktoriia Skowronek, Patricia Kukuk, Laura Vasa, Suresh K. Güntert, Peter Mueller, Leonard J. Linser, Rasmus |
author_sort | Klein, Alexander |
collection | PubMed |
description | NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment of backbone resonances, which becomes a bottleneck for molecular weights beyond 40 to 45 kDa. Here, we show that assignments for the (2x)72-kDa protein tryptophan synthase (665 amino acids per asymmetric unit) can be achieved via higher-dimensional, proton-detected, solid-state NMR using a single, 1-mg, uniformly labeled, microcrystalline sample. This framework grants access to atom-specific characterization of chemical properties and relaxation for the backbone and side chains, including those residues important for the catalytic turnover. Combined with first-principles calculations, the chemical shifts in the β-subunit active site suggest a connection between active-site chemistry, the electrostatic environment, and catalytically important dynamics of the portal to the β-subunit from solution. |
format | Online Article Text |
id | pubmed-8795498 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-87954982022-02-03 Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR Klein, Alexander Rovó, Petra Sakhrani, Varun V. Wang, Yangyang Holmes, Jacob B. Liu, Viktoriia Skowronek, Patricia Kukuk, Laura Vasa, Suresh K. Güntert, Peter Mueller, Leonard J. Linser, Rasmus Proc Natl Acad Sci U S A Biological Sciences NMR chemical shifts provide detailed information on the chemical properties of molecules, thereby complementing structural data from techniques like X-ray crystallography and electron microscopy. Detailed analysis of protein NMR data, however, often hinges on comprehensive, site-specific assignment of backbone resonances, which becomes a bottleneck for molecular weights beyond 40 to 45 kDa. Here, we show that assignments for the (2x)72-kDa protein tryptophan synthase (665 amino acids per asymmetric unit) can be achieved via higher-dimensional, proton-detected, solid-state NMR using a single, 1-mg, uniformly labeled, microcrystalline sample. This framework grants access to atom-specific characterization of chemical properties and relaxation for the backbone and side chains, including those residues important for the catalytic turnover. Combined with first-principles calculations, the chemical shifts in the β-subunit active site suggest a connection between active-site chemistry, the electrostatic environment, and catalytically important dynamics of the portal to the β-subunit from solution. National Academy of Sciences 2022-01-20 2022-01-25 /pmc/articles/PMC8795498/ /pubmed/35058365 http://dx.doi.org/10.1073/pnas.2114690119 Text en Copyright © 2022 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Biological Sciences Klein, Alexander Rovó, Petra Sakhrani, Varun V. Wang, Yangyang Holmes, Jacob B. Liu, Viktoriia Skowronek, Patricia Kukuk, Laura Vasa, Suresh K. Güntert, Peter Mueller, Leonard J. Linser, Rasmus Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR |
title | Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR |
title_full | Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR |
title_fullStr | Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR |
title_full_unstemmed | Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR |
title_short | Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional (1)H-detected solid-state NMR |
title_sort | atomic-resolution chemical characterization of (2x)72-kda tryptophan synthase via four- and five-dimensional (1)h-detected solid-state nmr |
topic | Biological Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795498/ https://www.ncbi.nlm.nih.gov/pubmed/35058365 http://dx.doi.org/10.1073/pnas.2114690119 |
work_keys_str_mv | AT kleinalexander atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT rovopetra atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT sakhranivarunv atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT wangyangyang atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT holmesjacobb atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT liuviktoriia atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT skowronekpatricia atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT kukuklaura atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT vasasureshk atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT guntertpeter atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT muellerleonardj atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr AT linserrasmus atomicresolutionchemicalcharacterizationof2x72kdatryptophansynthaseviafourandfivedimensional1hdetectedsolidstatenmr |