Cargando…

Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer

Gastric cancer (GC) is a malignant tumor with poor survival outcomes. Immunotherapy can improve the prognosis of many cancers, including GC. However, in clinical practice, not all cancer patients are sensitive to immunotherapy. Therefore, it is essential to identify effective biomarkers for predicti...

Descripción completa

Detalles Bibliográficos
Autores principales: Liang, Xiaolong, Yu, Gangfeng, Zha, Lang, Guo, Xiong, Cheng, Anqi, Qin, Chuan, Zhang, Han, Wang, Ziwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795836/
https://www.ncbi.nlm.nih.gov/pubmed/35096827
http://dx.doi.org/10.3389/fcell.2021.797341
_version_ 1784641162897784832
author Liang, Xiaolong
Yu, Gangfeng
Zha, Lang
Guo, Xiong
Cheng, Anqi
Qin, Chuan
Zhang, Han
Wang, Ziwei
author_facet Liang, Xiaolong
Yu, Gangfeng
Zha, Lang
Guo, Xiong
Cheng, Anqi
Qin, Chuan
Zhang, Han
Wang, Ziwei
author_sort Liang, Xiaolong
collection PubMed
description Gastric cancer (GC) is a malignant tumor with poor survival outcomes. Immunotherapy can improve the prognosis of many cancers, including GC. However, in clinical practice, not all cancer patients are sensitive to immunotherapy. Therefore, it is essential to identify effective biomarkers for predicting the prognosis and immunotherapy sensitivity of GC. In recent years, chemokines have been widely reported to regulate the tumor microenvironment, especially the immune landscape. However, whether chemokine-related lncRNAs are associated with the prognosis and immune landscape of GC remains unclear. In this study, we first constructed a novel chemokine-related lncRNA risk model to predict the prognosis and immune landscape of GC patients. By using various algorithms, we identified 10 chemokine-related lncRNAs to construct the risk model. Then, we determined the prognostic efficiency and accuracy of the risk model. The effectiveness and accuracy of the risk model were further validated in the testing set and the entire set. In addition, our risk model exerted a crucial role in predicting the infiltration of immune cells, immune checkpoint genes expression, immunotherapy scores and tumor mutation burden of GC patients. In conclusion, our risk model has preferable prognostic performance and may provide crucial clues to formulate immunotherapy strategies for GC.
format Online
Article
Text
id pubmed-8795836
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-87958362022-01-29 Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer Liang, Xiaolong Yu, Gangfeng Zha, Lang Guo, Xiong Cheng, Anqi Qin, Chuan Zhang, Han Wang, Ziwei Front Cell Dev Biol Cell and Developmental Biology Gastric cancer (GC) is a malignant tumor with poor survival outcomes. Immunotherapy can improve the prognosis of many cancers, including GC. However, in clinical practice, not all cancer patients are sensitive to immunotherapy. Therefore, it is essential to identify effective biomarkers for predicting the prognosis and immunotherapy sensitivity of GC. In recent years, chemokines have been widely reported to regulate the tumor microenvironment, especially the immune landscape. However, whether chemokine-related lncRNAs are associated with the prognosis and immune landscape of GC remains unclear. In this study, we first constructed a novel chemokine-related lncRNA risk model to predict the prognosis and immune landscape of GC patients. By using various algorithms, we identified 10 chemokine-related lncRNAs to construct the risk model. Then, we determined the prognostic efficiency and accuracy of the risk model. The effectiveness and accuracy of the risk model were further validated in the testing set and the entire set. In addition, our risk model exerted a crucial role in predicting the infiltration of immune cells, immune checkpoint genes expression, immunotherapy scores and tumor mutation burden of GC patients. In conclusion, our risk model has preferable prognostic performance and may provide crucial clues to formulate immunotherapy strategies for GC. Frontiers Media S.A. 2022-01-14 /pmc/articles/PMC8795836/ /pubmed/35096827 http://dx.doi.org/10.3389/fcell.2021.797341 Text en Copyright © 2022 Liang, Yu, Zha, Guo, Cheng, Qin, Zhang and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Cell and Developmental Biology
Liang, Xiaolong
Yu, Gangfeng
Zha, Lang
Guo, Xiong
Cheng, Anqi
Qin, Chuan
Zhang, Han
Wang, Ziwei
Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer
title Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer
title_full Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer
title_fullStr Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer
title_full_unstemmed Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer
title_short Identification and Comprehensive Prognostic Analysis of a Novel Chemokine-Related lncRNA Signature and Immune Landscape in Gastric Cancer
title_sort identification and comprehensive prognostic analysis of a novel chemokine-related lncrna signature and immune landscape in gastric cancer
topic Cell and Developmental Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8795836/
https://www.ncbi.nlm.nih.gov/pubmed/35096827
http://dx.doi.org/10.3389/fcell.2021.797341
work_keys_str_mv AT liangxiaolong identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT yugangfeng identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT zhalang identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT guoxiong identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT chenganqi identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT qinchuan identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT zhanghan identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer
AT wangziwei identificationandcomprehensiveprognosticanalysisofanovelchemokinerelatedlncrnasignatureandimmunelandscapeingastriccancer