Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea

The complete mitochondrial genome of the Cephalopholis urodeta (Serranidae: Epinephelinae) was sequenced by next-generation sequencing method on the basis of one female specimen collected from coral reef areas at the Mischief Reef, South China Sea. The mitogenome is 16,593 bp in length, including 13...

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Autores principales: Liu, Ning, Sun, Dianrong, Shan, Binbin, Liu, Yan, Wang, Liangming, Huang, Yingbang, Yang, Changping
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8797725/
https://www.ncbi.nlm.nih.gov/pubmed/35097215
http://dx.doi.org/10.1080/23802359.2022.2029602
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author Liu, Ning
Sun, Dianrong
Shan, Binbin
Liu, Yan
Wang, Liangming
Huang, Yingbang
Yang, Changping
author_facet Liu, Ning
Sun, Dianrong
Shan, Binbin
Liu, Yan
Wang, Liangming
Huang, Yingbang
Yang, Changping
author_sort Liu, Ning
collection PubMed
description The complete mitochondrial genome of the Cephalopholis urodeta (Serranidae: Epinephelinae) was sequenced by next-generation sequencing method on the basis of one female specimen collected from coral reef areas at the Mischief Reef, South China Sea. The mitogenome is 16,593 bp in length, including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a D-loop region. The overall content of A + T is 55.66%, which is significantly higher than the C + G content (44.34%). Among four bases, C shows the lowest frequency (15.99%). Phylogenetic tree based on the 13 protein-coding genes was constructed for analyzing the position of C. urodeta. The results provide useful insights into further studies on population genetics and phylogenetics of groupers.
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spelling pubmed-87977252022-01-29 Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea Liu, Ning Sun, Dianrong Shan, Binbin Liu, Yan Wang, Liangming Huang, Yingbang Yang, Changping Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of the Cephalopholis urodeta (Serranidae: Epinephelinae) was sequenced by next-generation sequencing method on the basis of one female specimen collected from coral reef areas at the Mischief Reef, South China Sea. The mitogenome is 16,593 bp in length, including 13 protein-coding genes, 22 tRNA genes, two rRNA genes and a D-loop region. The overall content of A + T is 55.66%, which is significantly higher than the C + G content (44.34%). Among four bases, C shows the lowest frequency (15.99%). Phylogenetic tree based on the 13 protein-coding genes was constructed for analyzing the position of C. urodeta. The results provide useful insights into further studies on population genetics and phylogenetics of groupers. Taylor & Francis 2022-01-27 /pmc/articles/PMC8797725/ /pubmed/35097215 http://dx.doi.org/10.1080/23802359.2022.2029602 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Liu, Ning
Sun, Dianrong
Shan, Binbin
Liu, Yan
Wang, Liangming
Huang, Yingbang
Yang, Changping
Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
title Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
title_full Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
title_fullStr Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
title_full_unstemmed Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
title_short Next generation sequencing yields the complete mitochondrial genome of the darkfin hind Cephalopholis urodeta (Serranidae) from the Mischief Reef, South China Sea
title_sort next generation sequencing yields the complete mitochondrial genome of the darkfin hind cephalopholis urodeta (serranidae) from the mischief reef, south china sea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8797725/
https://www.ncbi.nlm.nih.gov/pubmed/35097215
http://dx.doi.org/10.1080/23802359.2022.2029602
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