Cargando…
Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B
BACKGROUND: Gastric cancer is the third most lethal cancer worldwide. Finding a novel marker is essential to targeted therapy and the diagnosis of gastric cancer. As newly discovered markers, circRNAs have aroused widespread attention on a global scale. Our research aims to understand the role of ci...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798177/ https://www.ncbi.nlm.nih.gov/pubmed/35117027 http://dx.doi.org/10.21037/tcr.2019.10.32 |
_version_ | 1784641737661087744 |
---|---|
author | He, Shen-Nan Guan, Shi-Hua Wu, Meng-Yao Li, Wei Xu, Meng-Dan Tao, Min |
author_facet | He, Shen-Nan Guan, Shi-Hua Wu, Meng-Yao Li, Wei Xu, Meng-Dan Tao, Min |
author_sort | He, Shen-Nan |
collection | PubMed |
description | BACKGROUND: Gastric cancer is the third most lethal cancer worldwide. Finding a novel marker is essential to targeted therapy and the diagnosis of gastric cancer. As newly discovered markers, circRNAs have aroused widespread attention on a global scale. Our research aims to understand the role of circRNAs in gastric cancer and to explore the underlying pathogenesis. METHODS: Raw expression data of circRNAs were obtained from the GEO database. Integrated bioinformatics analysis was used to screen differentially expressed circRNAs (DECs) by RobustRankAggreg package. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis were performed to predict the functions of DECs. Then, the miRNAs and mRNAs at the downstream of DECs were predicted. Expression data of miRNAs and mRNAs were downloaded from The Cancer Genome Atlas (TCGA). The aberrantly expressed miRNAs and mRNAs were selected using the edgeR package. RESULTS: Four datasets (GSE78092, GSE83521, GSE89143, and GSE93541) were downloaded from the GEO database. Among them, two DECs (hsa_circ_0007991 and hsa_circ_0067934) were screened. The functional analyses of DECs confirmed that they were cancer-related circRNAs. Furthermore, hsa-mir-4705 (miRNA) and BMPR1B (mRNA) at the downstream of hsa_circ_0067934 were found differentially expressed in gastric cancer by expression data from TCGA database. CONCLUSIONS: Our study discovered the critical roles of hsa_circ_0007991 and hsa_circ_0067934 in the development of gastric cancer, and they could be novel markers for targeted therapy and assist the diagnosis of early-stage gastric cancer. Moreover, we discovered that the hsa_circ_0067934/hsa-mir-4705/BMPR1B axis might be involved in the carcinogenesis of gastric cancer. |
format | Online Article Text |
id | pubmed-8798177 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-87981772022-02-02 Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B He, Shen-Nan Guan, Shi-Hua Wu, Meng-Yao Li, Wei Xu, Meng-Dan Tao, Min Transl Cancer Res Original Article BACKGROUND: Gastric cancer is the third most lethal cancer worldwide. Finding a novel marker is essential to targeted therapy and the diagnosis of gastric cancer. As newly discovered markers, circRNAs have aroused widespread attention on a global scale. Our research aims to understand the role of circRNAs in gastric cancer and to explore the underlying pathogenesis. METHODS: Raw expression data of circRNAs were obtained from the GEO database. Integrated bioinformatics analysis was used to screen differentially expressed circRNAs (DECs) by RobustRankAggreg package. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis were performed to predict the functions of DECs. Then, the miRNAs and mRNAs at the downstream of DECs were predicted. Expression data of miRNAs and mRNAs were downloaded from The Cancer Genome Atlas (TCGA). The aberrantly expressed miRNAs and mRNAs were selected using the edgeR package. RESULTS: Four datasets (GSE78092, GSE83521, GSE89143, and GSE93541) were downloaded from the GEO database. Among them, two DECs (hsa_circ_0007991 and hsa_circ_0067934) were screened. The functional analyses of DECs confirmed that they were cancer-related circRNAs. Furthermore, hsa-mir-4705 (miRNA) and BMPR1B (mRNA) at the downstream of hsa_circ_0067934 were found differentially expressed in gastric cancer by expression data from TCGA database. CONCLUSIONS: Our study discovered the critical roles of hsa_circ_0007991 and hsa_circ_0067934 in the development of gastric cancer, and they could be novel markers for targeted therapy and assist the diagnosis of early-stage gastric cancer. Moreover, we discovered that the hsa_circ_0067934/hsa-mir-4705/BMPR1B axis might be involved in the carcinogenesis of gastric cancer. AME Publishing Company 2019-12 /pmc/articles/PMC8798177/ /pubmed/35117027 http://dx.doi.org/10.21037/tcr.2019.10.32 Text en 2019 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/. |
spellingShingle | Original Article He, Shen-Nan Guan, Shi-Hua Wu, Meng-Yao Li, Wei Xu, Meng-Dan Tao, Min Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B |
title | Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B |
title_full | Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B |
title_fullStr | Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B |
title_full_unstemmed | Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B |
title_short | Down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of BMPR1B |
title_sort | down-regulated hsa_circ_0067934 facilitated the progression of gastric cancer by sponging hsa-mir-4705 to downgrade the expression of bmpr1b |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798177/ https://www.ncbi.nlm.nih.gov/pubmed/35117027 http://dx.doi.org/10.21037/tcr.2019.10.32 |
work_keys_str_mv | AT heshennan downregulatedhsacirc0067934facilitatedtheprogressionofgastriccancerbysponginghsamir4705todowngradetheexpressionofbmpr1b AT guanshihua downregulatedhsacirc0067934facilitatedtheprogressionofgastriccancerbysponginghsamir4705todowngradetheexpressionofbmpr1b AT wumengyao downregulatedhsacirc0067934facilitatedtheprogressionofgastriccancerbysponginghsamir4705todowngradetheexpressionofbmpr1b AT liwei downregulatedhsacirc0067934facilitatedtheprogressionofgastriccancerbysponginghsamir4705todowngradetheexpressionofbmpr1b AT xumengdan downregulatedhsacirc0067934facilitatedtheprogressionofgastriccancerbysponginghsamir4705todowngradetheexpressionofbmpr1b AT taomin downregulatedhsacirc0067934facilitatedtheprogressionofgastriccancerbysponginghsamir4705todowngradetheexpressionofbmpr1b |