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A role of TTI1 in the colorectal cancer by promoting proliferation

BACKGROUND: Colorectal cancer (CRC) is one of the most malignant cancer worldwide, which leads to a high incidence and mortality. The molecular mechanism in CRC is still limited. The aim of this study was to identify hub genes and its related function in CRC. METHODS: The expression dataset (GSE4407...

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Autores principales: Xu, Peng, Du, Guangsheng, Guan, Haidi, Xiao, Weidong, Sun, Lihua, Yang, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798799/
https://www.ncbi.nlm.nih.gov/pubmed/35116463
http://dx.doi.org/10.21037/tcr-20-3322
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author Xu, Peng
Du, Guangsheng
Guan, Haidi
Xiao, Weidong
Sun, Lihua
Yang, Hua
author_facet Xu, Peng
Du, Guangsheng
Guan, Haidi
Xiao, Weidong
Sun, Lihua
Yang, Hua
author_sort Xu, Peng
collection PubMed
description BACKGROUND: Colorectal cancer (CRC) is one of the most malignant cancer worldwide, which leads to a high incidence and mortality. The molecular mechanism in CRC is still limited. The aim of this study was to identify hub genes and its related function in CRC. METHODS: The expression dataset (GSE44076) was downloaded from Gene Expression Omnibus (GEO) and differentially expressed genes (DEGs) analysis was done using R ‘limma’ packages. Weighted gene co-expression network analysis (WGCNA) was done and tumor-specific modules were picked up for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The hub gene was selected with higher inter-connectivity. Expression levels of TTI1 were verified by in clinical CRC tissues. The cell counting kit-8 (CCK-8) assay was to measure the proliferative ability of TTI1. RESULTS: Eight hundred and eight up-regulated and 929 down-regulated DEGs were screened out. Up-regulated genes enriched in cell proliferation and down-regulated genes enriched in oxidation-reduction process. After WGCNA, the yellow module was found to be the most significant tumor-specific module. Function analysis showed genes in the yellow module enriched in oxidation-reduction, cell proliferation and extracellular matrix (ECM)-receptor interaction. TTI1 was demonstrated as the hub gene. Real-time quantitative reverse transcription((qRT-PCR) results showed TTI1 significantly expressed higher in CRC tissues than adjacent normal tissues. TTI1 dramatically correlated with proliferation in CRC. CONCLUSIONS: These findings regarded TTI1 as a vital promoting factor in CRC development and provided a potential biomarker for CRC treatment.
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spelling pubmed-87987992022-02-02 A role of TTI1 in the colorectal cancer by promoting proliferation Xu, Peng Du, Guangsheng Guan, Haidi Xiao, Weidong Sun, Lihua Yang, Hua Transl Cancer Res Original Article BACKGROUND: Colorectal cancer (CRC) is one of the most malignant cancer worldwide, which leads to a high incidence and mortality. The molecular mechanism in CRC is still limited. The aim of this study was to identify hub genes and its related function in CRC. METHODS: The expression dataset (GSE44076) was downloaded from Gene Expression Omnibus (GEO) and differentially expressed genes (DEGs) analysis was done using R ‘limma’ packages. Weighted gene co-expression network analysis (WGCNA) was done and tumor-specific modules were picked up for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis. The hub gene was selected with higher inter-connectivity. Expression levels of TTI1 were verified by in clinical CRC tissues. The cell counting kit-8 (CCK-8) assay was to measure the proliferative ability of TTI1. RESULTS: Eight hundred and eight up-regulated and 929 down-regulated DEGs were screened out. Up-regulated genes enriched in cell proliferation and down-regulated genes enriched in oxidation-reduction process. After WGCNA, the yellow module was found to be the most significant tumor-specific module. Function analysis showed genes in the yellow module enriched in oxidation-reduction, cell proliferation and extracellular matrix (ECM)-receptor interaction. TTI1 was demonstrated as the hub gene. Real-time quantitative reverse transcription((qRT-PCR) results showed TTI1 significantly expressed higher in CRC tissues than adjacent normal tissues. TTI1 dramatically correlated with proliferation in CRC. CONCLUSIONS: These findings regarded TTI1 as a vital promoting factor in CRC development and provided a potential biomarker for CRC treatment. AME Publishing Company 2021-03 /pmc/articles/PMC8798799/ /pubmed/35116463 http://dx.doi.org/10.21037/tcr-20-3322 Text en 2021 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
spellingShingle Original Article
Xu, Peng
Du, Guangsheng
Guan, Haidi
Xiao, Weidong
Sun, Lihua
Yang, Hua
A role of TTI1 in the colorectal cancer by promoting proliferation
title A role of TTI1 in the colorectal cancer by promoting proliferation
title_full A role of TTI1 in the colorectal cancer by promoting proliferation
title_fullStr A role of TTI1 in the colorectal cancer by promoting proliferation
title_full_unstemmed A role of TTI1 in the colorectal cancer by promoting proliferation
title_short A role of TTI1 in the colorectal cancer by promoting proliferation
title_sort role of tti1 in the colorectal cancer by promoting proliferation
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798799/
https://www.ncbi.nlm.nih.gov/pubmed/35116463
http://dx.doi.org/10.21037/tcr-20-3322
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