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Prognostic value of immune-related genes in laryngeal squamous cell carcinoma

BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a very common cancer in head and neck. A large amount of evidence indicated that immune genes take a non-negligible part in the occurrence and development of LSCC. We aimed to evaluate the prognostic value of the immune-related genes (IRGs) in...

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Autores principales: Liu, Weixing, Zhang, Chunyi, Gong, Xin, Liao, Wenjing, Xu, Jun, Zhang, Xiaowen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798985/
https://www.ncbi.nlm.nih.gov/pubmed/35117238
http://dx.doi.org/10.21037/tcr-20-2173
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author Liu, Weixing
Zhang, Chunyi
Gong, Xin
Liao, Wenjing
Xu, Jun
Zhang, Xiaowen
author_facet Liu, Weixing
Zhang, Chunyi
Gong, Xin
Liao, Wenjing
Xu, Jun
Zhang, Xiaowen
author_sort Liu, Weixing
collection PubMed
description BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a very common cancer in head and neck. A large amount of evidence indicated that immune genes take a non-negligible part in the occurrence and development of LSCC. We aimed to evaluate the prognostic value of the immune-related genes (IRGs) in LSCC. METHODS: We analyzed the expression profiles of IRGs and clinical information of patients from The Cancer Genome Atlas (TCGA) dataset, including one hundred and fourteen LSCC and eleven non-tumor tissues. The uncover molecular mechanisms of these survival-associated IRGs (SAIRGs) were explored by the bioinformatics analyses. A novel prognostic model based on IRGs was developed through multivariate Cox regression. RESULTS: Twenty-seven differentially expressed SAIRGs in LSCC patients. Copy number alterations, protein-protein interaction (PPI) network, transcription factors (TFs) regulate network were used to identify molecular characteristics of these IRGs. We established an IRGs (TLR2, XCL2, CYSLTR2 and FCGR3B) based prognostic model (IRGPM), which had good performance to predict the prognosis of LSCC (AUC =0.820, P<0.05). Further analysis, we found the IRGPM can reflect the infiltration of several immune cells. CONCLUSIONS: IRGs have a potential role in the occurrence and development of LSCC, and the IRGPM can predict the overall survival rate of LSCC.
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spelling pubmed-87989852022-02-02 Prognostic value of immune-related genes in laryngeal squamous cell carcinoma Liu, Weixing Zhang, Chunyi Gong, Xin Liao, Wenjing Xu, Jun Zhang, Xiaowen Transl Cancer Res Original Article BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a very common cancer in head and neck. A large amount of evidence indicated that immune genes take a non-negligible part in the occurrence and development of LSCC. We aimed to evaluate the prognostic value of the immune-related genes (IRGs) in LSCC. METHODS: We analyzed the expression profiles of IRGs and clinical information of patients from The Cancer Genome Atlas (TCGA) dataset, including one hundred and fourteen LSCC and eleven non-tumor tissues. The uncover molecular mechanisms of these survival-associated IRGs (SAIRGs) were explored by the bioinformatics analyses. A novel prognostic model based on IRGs was developed through multivariate Cox regression. RESULTS: Twenty-seven differentially expressed SAIRGs in LSCC patients. Copy number alterations, protein-protein interaction (PPI) network, transcription factors (TFs) regulate network were used to identify molecular characteristics of these IRGs. We established an IRGs (TLR2, XCL2, CYSLTR2 and FCGR3B) based prognostic model (IRGPM), which had good performance to predict the prognosis of LSCC (AUC =0.820, P<0.05). Further analysis, we found the IRGPM can reflect the infiltration of several immune cells. CONCLUSIONS: IRGs have a potential role in the occurrence and development of LSCC, and the IRGPM can predict the overall survival rate of LSCC. AME Publishing Company 2020-10 /pmc/articles/PMC8798985/ /pubmed/35117238 http://dx.doi.org/10.21037/tcr-20-2173 Text en 2020 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/.
spellingShingle Original Article
Liu, Weixing
Zhang, Chunyi
Gong, Xin
Liao, Wenjing
Xu, Jun
Zhang, Xiaowen
Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
title Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
title_full Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
title_fullStr Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
title_full_unstemmed Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
title_short Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
title_sort prognostic value of immune-related genes in laryngeal squamous cell carcinoma
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798985/
https://www.ncbi.nlm.nih.gov/pubmed/35117238
http://dx.doi.org/10.21037/tcr-20-2173
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