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Prognostic value of immune-related genes in laryngeal squamous cell carcinoma
BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a very common cancer in head and neck. A large amount of evidence indicated that immune genes take a non-negligible part in the occurrence and development of LSCC. We aimed to evaluate the prognostic value of the immune-related genes (IRGs) in...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798985/ https://www.ncbi.nlm.nih.gov/pubmed/35117238 http://dx.doi.org/10.21037/tcr-20-2173 |
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author | Liu, Weixing Zhang, Chunyi Gong, Xin Liao, Wenjing Xu, Jun Zhang, Xiaowen |
author_facet | Liu, Weixing Zhang, Chunyi Gong, Xin Liao, Wenjing Xu, Jun Zhang, Xiaowen |
author_sort | Liu, Weixing |
collection | PubMed |
description | BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a very common cancer in head and neck. A large amount of evidence indicated that immune genes take a non-negligible part in the occurrence and development of LSCC. We aimed to evaluate the prognostic value of the immune-related genes (IRGs) in LSCC. METHODS: We analyzed the expression profiles of IRGs and clinical information of patients from The Cancer Genome Atlas (TCGA) dataset, including one hundred and fourteen LSCC and eleven non-tumor tissues. The uncover molecular mechanisms of these survival-associated IRGs (SAIRGs) were explored by the bioinformatics analyses. A novel prognostic model based on IRGs was developed through multivariate Cox regression. RESULTS: Twenty-seven differentially expressed SAIRGs in LSCC patients. Copy number alterations, protein-protein interaction (PPI) network, transcription factors (TFs) regulate network were used to identify molecular characteristics of these IRGs. We established an IRGs (TLR2, XCL2, CYSLTR2 and FCGR3B) based prognostic model (IRGPM), which had good performance to predict the prognosis of LSCC (AUC =0.820, P<0.05). Further analysis, we found the IRGPM can reflect the infiltration of several immune cells. CONCLUSIONS: IRGs have a potential role in the occurrence and development of LSCC, and the IRGPM can predict the overall survival rate of LSCC. |
format | Online Article Text |
id | pubmed-8798985 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-87989852022-02-02 Prognostic value of immune-related genes in laryngeal squamous cell carcinoma Liu, Weixing Zhang, Chunyi Gong, Xin Liao, Wenjing Xu, Jun Zhang, Xiaowen Transl Cancer Res Original Article BACKGROUND: Laryngeal squamous cell carcinoma (LSCC) is a very common cancer in head and neck. A large amount of evidence indicated that immune genes take a non-negligible part in the occurrence and development of LSCC. We aimed to evaluate the prognostic value of the immune-related genes (IRGs) in LSCC. METHODS: We analyzed the expression profiles of IRGs and clinical information of patients from The Cancer Genome Atlas (TCGA) dataset, including one hundred and fourteen LSCC and eleven non-tumor tissues. The uncover molecular mechanisms of these survival-associated IRGs (SAIRGs) were explored by the bioinformatics analyses. A novel prognostic model based on IRGs was developed through multivariate Cox regression. RESULTS: Twenty-seven differentially expressed SAIRGs in LSCC patients. Copy number alterations, protein-protein interaction (PPI) network, transcription factors (TFs) regulate network were used to identify molecular characteristics of these IRGs. We established an IRGs (TLR2, XCL2, CYSLTR2 and FCGR3B) based prognostic model (IRGPM), which had good performance to predict the prognosis of LSCC (AUC =0.820, P<0.05). Further analysis, we found the IRGPM can reflect the infiltration of several immune cells. CONCLUSIONS: IRGs have a potential role in the occurrence and development of LSCC, and the IRGPM can predict the overall survival rate of LSCC. AME Publishing Company 2020-10 /pmc/articles/PMC8798985/ /pubmed/35117238 http://dx.doi.org/10.21037/tcr-20-2173 Text en 2020 Translational Cancer Research. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0/. |
spellingShingle | Original Article Liu, Weixing Zhang, Chunyi Gong, Xin Liao, Wenjing Xu, Jun Zhang, Xiaowen Prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
title | Prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
title_full | Prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
title_fullStr | Prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
title_full_unstemmed | Prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
title_short | Prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
title_sort | prognostic value of immune-related genes in laryngeal squamous cell carcinoma |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8798985/ https://www.ncbi.nlm.nih.gov/pubmed/35117238 http://dx.doi.org/10.21037/tcr-20-2173 |
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