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A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks

The pandemic caused by the COVID-19 virus affects the world widely and heavily. When examining the CT, X-ray, and ultrasound images, radiologists must first determine whether there are signs of COVID-19 in the images. That is, COVID-19/Healthy detection is made. The second determination is the separ...

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Autores principales: Yaşar, Huseyin, Ceylan, Murat
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8799982/
https://www.ncbi.nlm.nih.gov/pubmed/35125671
http://dx.doi.org/10.1007/s00530-022-00892-z
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author Yaşar, Huseyin
Ceylan, Murat
author_facet Yaşar, Huseyin
Ceylan, Murat
author_sort Yaşar, Huseyin
collection PubMed
description The pandemic caused by the COVID-19 virus affects the world widely and heavily. When examining the CT, X-ray, and ultrasound images, radiologists must first determine whether there are signs of COVID-19 in the images. That is, COVID-19/Healthy detection is made. The second determination is the separation of pneumonia caused by the COVID-19 virus and pneumonia caused by a bacteria or virus other than COVID-19. This distinction is key in determining the treatment and isolation procedure to be applied to the patient. In this study, which aims to diagnose COVID-19 early using X-ray images, automatic two-class classification was carried out in four different titles: COVID-19/Healthy, COVID-19 Pneumonia/Bacterial Pneumonia, COVID-19 Pneumonia/Viral Pneumonia, and COVID-19 Pneumonia/Other Pneumonia. For this study, 3405 COVID-19, 2780 Bacterial Pneumonia, 1493 Viral Pneumonia, and 1989 Healthy images obtained by combining eight different data sets with open access were used. In the study, besides using the original X-ray images alone, classification results were obtained by accessing the images obtained using Local Binary Pattern (LBP) and Local Entropy (LE). The classification procedures were repeated for the images that were combined with the original images, LBP, and LE images in various combinations. 2-D CNN (Two-Dimensional Convolutional Neural Networks) and 3-D CNN (Three-Dimensional Convolutional Neural Networks) architectures were used as classifiers within the scope of the study. Mobilenetv2, Resnet101, and Googlenet architectures were used in the study as a 2-D CNN. A 24-layer 3-D CNN architecture has also been designed and used. Our study is the first to analyze the effect of diversification of input data type on classification results of 2-D/3-D CNN architectures. The results obtained within the scope of the study indicate that diversifying X-ray images with tissue analysis methods in the diagnosis of COVID-19 and including CNN input provides significant improvements in the results. Also, it is understood that the 3-D CNN architecture can be an important alternative to achieve a high classification result.
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spelling pubmed-87999822022-01-31 A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks Yaşar, Huseyin Ceylan, Murat Multimed Syst Regular Paper The pandemic caused by the COVID-19 virus affects the world widely and heavily. When examining the CT, X-ray, and ultrasound images, radiologists must first determine whether there are signs of COVID-19 in the images. That is, COVID-19/Healthy detection is made. The second determination is the separation of pneumonia caused by the COVID-19 virus and pneumonia caused by a bacteria or virus other than COVID-19. This distinction is key in determining the treatment and isolation procedure to be applied to the patient. In this study, which aims to diagnose COVID-19 early using X-ray images, automatic two-class classification was carried out in four different titles: COVID-19/Healthy, COVID-19 Pneumonia/Bacterial Pneumonia, COVID-19 Pneumonia/Viral Pneumonia, and COVID-19 Pneumonia/Other Pneumonia. For this study, 3405 COVID-19, 2780 Bacterial Pneumonia, 1493 Viral Pneumonia, and 1989 Healthy images obtained by combining eight different data sets with open access were used. In the study, besides using the original X-ray images alone, classification results were obtained by accessing the images obtained using Local Binary Pattern (LBP) and Local Entropy (LE). The classification procedures were repeated for the images that were combined with the original images, LBP, and LE images in various combinations. 2-D CNN (Two-Dimensional Convolutional Neural Networks) and 3-D CNN (Three-Dimensional Convolutional Neural Networks) architectures were used as classifiers within the scope of the study. Mobilenetv2, Resnet101, and Googlenet architectures were used in the study as a 2-D CNN. A 24-layer 3-D CNN architecture has also been designed and used. Our study is the first to analyze the effect of diversification of input data type on classification results of 2-D/3-D CNN architectures. The results obtained within the scope of the study indicate that diversifying X-ray images with tissue analysis methods in the diagnosis of COVID-19 and including CNN input provides significant improvements in the results. Also, it is understood that the 3-D CNN architecture can be an important alternative to achieve a high classification result. Springer Berlin Heidelberg 2022-01-29 /pmc/articles/PMC8799982/ /pubmed/35125671 http://dx.doi.org/10.1007/s00530-022-00892-z Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Regular Paper
Yaşar, Huseyin
Ceylan, Murat
A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks
title A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks
title_full A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks
title_fullStr A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks
title_full_unstemmed A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks
title_short A novel study for automatic two-class COVID-19 diagnosis (between COVID-19 and Healthy, Pneumonia) on X-ray images using texture analysis and 2-D/3-D convolutional neural networks
title_sort novel study for automatic two-class covid-19 diagnosis (between covid-19 and healthy, pneumonia) on x-ray images using texture analysis and 2-d/3-d convolutional neural networks
topic Regular Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8799982/
https://www.ncbi.nlm.nih.gov/pubmed/35125671
http://dx.doi.org/10.1007/s00530-022-00892-z
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