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Accelerating the pace of ecotoxicological assessment using artificial intelligence
Species Sensitivity Distribution (SSD) is a key metric for understanding the potential ecotoxicological impacts of chemicals. However, SSDs have been developed to estimate for only handful of chemicals due to the scarcity of experimental toxicity data. Here we present a novel approach to expand the...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8800994/ https://www.ncbi.nlm.nih.gov/pubmed/34427865 http://dx.doi.org/10.1007/s13280-021-01598-8 |
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author | Song, Runsheng Li, Dingsheng Chang, Alexander Tao, Mengya Qin, Yuwei Keller, Arturo A. Suh, Sangwon |
author_facet | Song, Runsheng Li, Dingsheng Chang, Alexander Tao, Mengya Qin, Yuwei Keller, Arturo A. Suh, Sangwon |
author_sort | Song, Runsheng |
collection | PubMed |
description | Species Sensitivity Distribution (SSD) is a key metric for understanding the potential ecotoxicological impacts of chemicals. However, SSDs have been developed to estimate for only handful of chemicals due to the scarcity of experimental toxicity data. Here we present a novel approach to expand the chemical coverage of SSDs using Artificial Neural Network (ANN). We collected over 2000 experimental toxicity data in Lethal Concentration 50 (LC50) for 8 aquatic species and trained an ANN model for each of the 8 aquatic species based on molecular structure. The R(2) values of resulting ANN models range from 0.54 to 0.75 (median R(2) = 0.69). We applied the predicted LC50 values to fit SSD curves using bootstrapping method, generating SSDs for 8424 chemicals in the ToX21 database. The dataset is expected to serve as a screening-level reference SSD database for understanding potential ecotoxicological impacts of chemicals. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13280-021-01598-8. |
format | Online Article Text |
id | pubmed-8800994 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-88009942022-02-02 Accelerating the pace of ecotoxicological assessment using artificial intelligence Song, Runsheng Li, Dingsheng Chang, Alexander Tao, Mengya Qin, Yuwei Keller, Arturo A. Suh, Sangwon Ambio Research Article Species Sensitivity Distribution (SSD) is a key metric for understanding the potential ecotoxicological impacts of chemicals. However, SSDs have been developed to estimate for only handful of chemicals due to the scarcity of experimental toxicity data. Here we present a novel approach to expand the chemical coverage of SSDs using Artificial Neural Network (ANN). We collected over 2000 experimental toxicity data in Lethal Concentration 50 (LC50) for 8 aquatic species and trained an ANN model for each of the 8 aquatic species based on molecular structure. The R(2) values of resulting ANN models range from 0.54 to 0.75 (median R(2) = 0.69). We applied the predicted LC50 values to fit SSD curves using bootstrapping method, generating SSDs for 8424 chemicals in the ToX21 database. The dataset is expected to serve as a screening-level reference SSD database for understanding potential ecotoxicological impacts of chemicals. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13280-021-01598-8. Springer Netherlands 2021-08-24 2022-03 /pmc/articles/PMC8800994/ /pubmed/34427865 http://dx.doi.org/10.1007/s13280-021-01598-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Song, Runsheng Li, Dingsheng Chang, Alexander Tao, Mengya Qin, Yuwei Keller, Arturo A. Suh, Sangwon Accelerating the pace of ecotoxicological assessment using artificial intelligence |
title | Accelerating the pace of ecotoxicological assessment using artificial intelligence |
title_full | Accelerating the pace of ecotoxicological assessment using artificial intelligence |
title_fullStr | Accelerating the pace of ecotoxicological assessment using artificial intelligence |
title_full_unstemmed | Accelerating the pace of ecotoxicological assessment using artificial intelligence |
title_short | Accelerating the pace of ecotoxicological assessment using artificial intelligence |
title_sort | accelerating the pace of ecotoxicological assessment using artificial intelligence |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8800994/ https://www.ncbi.nlm.nih.gov/pubmed/34427865 http://dx.doi.org/10.1007/s13280-021-01598-8 |
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