Cargando…

Seven-CpG DNA Methylation Age Determined by Single Nucleotide Primer Extension and Illumina’s Infinium MethylationEPIC Array Provide Highly Comparable Results

DNA methylation age (DNAm age, epigenetic clock) is a novel and promising biomarker of aging. It is calculated from the methylation fraction of specific cytosine phosphate guanine sites (CpG sites) of genomic DNA. Several groups have proposed epigenetic clock algorithms and these differ mostly regar...

Descripción completa

Detalles Bibliográficos
Autores principales:	Vetter, Valentin Max, Kalies, Christian Humberto, Sommerer, Yasmine, Bertram, Lars, Demuth, Ilja
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2022
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802213/ https://www.ncbi.nlm.nih.gov/pubmed/35111197 http://dx.doi.org/10.3389/fgene.2021.759357

Ejemplares similares

Profiling DNA methylation differences between inbred mouse strains on the Illumina Human Infinium MethylationEPIC microarray
por: Gujar, Hemant, et al.
Publicado: (2018)

The impact of low input DNA on the reliability of DNA methylation as measured by the Illumina Infinium MethylationEPIC BeadChip
por: Watkins, Sarah Holmes, et al.
Publicado: (2022)

Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip
por: McCartney, Daniel L., et al.
Publicado: (2016)

Genome-wide DNA methylation profiling in human breast tissue by Illumina TruSeq methyl capture EPIC sequencing and infinium methylationEPIC beadchip microarray
por: Lin, Nan, et al.
Publicado: (2020)

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies
por: Needhamsen, Maria, et al.
Publicado: (2017)

A novel principal component based method for identifying differentially methylated regions in Illumina Infinium MethylationEPIC BeadChip data
por: Zheng, Yuanchao, et al.
Publicado: (2023)

Evaluating DNA methylation age on the Illumina MethylationEPIC Bead Chip
por: Dhingra, Radhika, et al.
Publicado: (2019)

Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage
por: Cheung, Kathleen, et al.
Publicado: (2019)

Comparison of methylation capture sequencing and Infinium MethylationEPIC array in peripheral blood mononuclear cells
por: Shu, Chang, et al.
Publicado: (2020)

Comparison of methylation patterns generated from genomic and cell-line derived DNA using the Illumina Infinium MethylationEPIC BeadChip array
por: Smyth, L. J., et al.
Publicado: (2019)

Reproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts
por: Christiansen, Steffan Noe, et al.
Publicado: (2022)

Differential Methylation Analysis of Suicidal Ideation Severity in Schizophrenia with the Illumina MethylationEPIC Array
por: Wang, Kevin Z., et al.
Publicado: (2022)

Evaluation of the pooled sample method in Infinium MethylationEPIC BeadChip array by comparison with individual samples
por: Nishitani, Shota, et al.
Publicado: (2023)

Systematic evaluation of DNA methylation age estimation with common preprocessing methods and the Infinium MethylationEPIC BeadChip array
por: McEwen, Lisa M, et al.
Publicado: (2018)

Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC BeadChip microarrays
por: Zhang, Wei, et al.
Publicado: (2023)

Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling
por: Pidsley, Ruth, et al.
Publicado: (2016)

Improving Infinium MethylationEPIC data processing: re-annotation of enhancers and long noncoding RNA genes and benchmarking of normalization methods
por: Bizet, Martin, et al.
Publicado: (2022)

Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
por: Ross, Jason P., et al.
Publicado: (2022)

DNA methylation age acceleration is associated with risk of diabetes complications
por: Vetter, Valentin Max, et al.
Publicado: (2023)

Variations in 5-methylcytosine and 5-hydroxymethylcytosine among human brain, blood, and saliva using oxBS and the Infinium MethylationEPIC array
por: Gross, Jeffrey A., et al.
Publicado: (2016)

Genome-wide methylation profiling of early colorectal cancer using an Illumina Infinium Methylation EPIC BeadChip
por: Wu, Yu-Ling, et al.
Publicado: (2022)

Blood-based epigenetic estimators of chronological age in human adults using DNA methylation data from the Illumina MethylationEPIC array
por: Lee, Yunsung, et al.
Publicado: (2020)

Vitamin D supplementation is associated with slower epigenetic aging
por: Vetter, Valentin Max, et al.
Publicado: (2022)

VITAMIN D DEFICIENCY AND FASTER EPIGENETIC AGING: RESULTS FROM THE BERLIN AGING STUDY II (BASE-II)
por: Vetter, Valentin, et al.
Publicado: (2022)

Low-level processing of Illumina Infinium DNA Methylation BeadArrays
por: Triche, Timothy J., et al.
Publicado: (2013)

Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours
por: Kling, Teresia, et al.
Publicado: (2017)

Epigenetic aging and perceived psychological stress in old age
por: Vetter, Valentin Max, et al.
Publicado: (2022)

Batch effect correction for genome-wide methylation data with Illumina Infinium platform
por: Sun, Zhifu, et al.
Publicado: (2011)

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
por: Chen, Yi-an, et al.
Publicado: (2013)

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
por: Wang, Zhenxing, et al.
Publicado: (2018)

A systematic evaluation of normalization methods and probe replicability using infinium EPIC methylation data
por: Welsh, H., et al.
Publicado: (2023)

Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies
por: Daca-Roszak, Patrycja, et al.
Publicado: (2015)

A comparison of feature selection and classification methods in DNA methylation studies using the Illumina Infinium platform
por: Zhuang, Joanna, et al.
Publicado: (2012)

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
por: Maksimovic, Jovana, et al.
Publicado: (2012)

An accessible GenePattern notebook for the copy number variation analysis of Illumina Infinium DNA methylation arrays
por: Mah, Clarence K., et al.
Publicado: (2018)

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi
por: Fortin, Jean-Philippe, et al.
Publicado: (2017)

HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data
por: Mancuso, Francesco M, et al.
Publicado: (2011)

Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array
por: Mansell, Georgina, et al.
Publicado: (2019)

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
por: Price, E Magda, et al.
Publicado: (2013)

MGMIN: A Normalization Method for Correcting Probe Design Bias in Illumina Infinium HumanMethylation450 BeadChips
por: Wang, Zhenxing, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_h9ohl61cmp2am6fncn6lr2b5v4