Cargando…

Merging NMR Data and Computation Facilitates Data-Centered Research

The Biological Magnetic Resonance Data Bank (BMRB) has served the NMR structural biology community for 40 years, and has been instrumental in the development of many widely-used tools. It fosters the reuse of data resources in structural biology by embodying the FAIR data principles (Findable, Acces...

Descripción completa

Detalles Bibliográficos
Autores principales: Baskaran, Kumaran, Craft, D. Levi, Eghbalnia, Hamid R., Gryk, Michael R., Hoch, Jeffrey C., Maciejewski, Mark W., Schuyler, Adam D., Wedell, Jonathan R., Wilburn, Colin W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802229/
https://www.ncbi.nlm.nih.gov/pubmed/35111815
http://dx.doi.org/10.3389/fmolb.2021.817175
_version_ 1784642635975098368
author Baskaran, Kumaran
Craft, D. Levi
Eghbalnia, Hamid R.
Gryk, Michael R.
Hoch, Jeffrey C.
Maciejewski, Mark W.
Schuyler, Adam D.
Wedell, Jonathan R.
Wilburn, Colin W.
author_facet Baskaran, Kumaran
Craft, D. Levi
Eghbalnia, Hamid R.
Gryk, Michael R.
Hoch, Jeffrey C.
Maciejewski, Mark W.
Schuyler, Adam D.
Wedell, Jonathan R.
Wilburn, Colin W.
author_sort Baskaran, Kumaran
collection PubMed
description The Biological Magnetic Resonance Data Bank (BMRB) has served the NMR structural biology community for 40 years, and has been instrumental in the development of many widely-used tools. It fosters the reuse of data resources in structural biology by embodying the FAIR data principles (Findable, Accessible, Inter-operable, and Re-usable). NMRbox is less than a decade old, but complements BMRB by providing NMR software and high-performance computing resources, facilitating the reuse of software resources. BMRB and NMRbox both facilitate reproducible research. NMRbox also fosters the development and deployment of complex meta-software. Combining BMRB and NMRbox helps speed and simplify workflows that utilize BMRB, and enables facile federation of BMRB with other data repositories. Utilization of BMRB and NMRbox in tandem will enable additional advances, such as machine learning, that are poised to become increasingly powerful.
format Online
Article
Text
id pubmed-8802229
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-88022292022-02-01 Merging NMR Data and Computation Facilitates Data-Centered Research Baskaran, Kumaran Craft, D. Levi Eghbalnia, Hamid R. Gryk, Michael R. Hoch, Jeffrey C. Maciejewski, Mark W. Schuyler, Adam D. Wedell, Jonathan R. Wilburn, Colin W. Front Mol Biosci Molecular Biosciences The Biological Magnetic Resonance Data Bank (BMRB) has served the NMR structural biology community for 40 years, and has been instrumental in the development of many widely-used tools. It fosters the reuse of data resources in structural biology by embodying the FAIR data principles (Findable, Accessible, Inter-operable, and Re-usable). NMRbox is less than a decade old, but complements BMRB by providing NMR software and high-performance computing resources, facilitating the reuse of software resources. BMRB and NMRbox both facilitate reproducible research. NMRbox also fosters the development and deployment of complex meta-software. Combining BMRB and NMRbox helps speed and simplify workflows that utilize BMRB, and enables facile federation of BMRB with other data repositories. Utilization of BMRB and NMRbox in tandem will enable additional advances, such as machine learning, that are poised to become increasingly powerful. Frontiers Media S.A. 2022-01-17 /pmc/articles/PMC8802229/ /pubmed/35111815 http://dx.doi.org/10.3389/fmolb.2021.817175 Text en Copyright © 2022 Baskaran, Craft, Eghbalnia, Gryk, Hoch, Maciejewski, Schuyler, Wedell and Wilburn. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Baskaran, Kumaran
Craft, D. Levi
Eghbalnia, Hamid R.
Gryk, Michael R.
Hoch, Jeffrey C.
Maciejewski, Mark W.
Schuyler, Adam D.
Wedell, Jonathan R.
Wilburn, Colin W.
Merging NMR Data and Computation Facilitates Data-Centered Research
title Merging NMR Data and Computation Facilitates Data-Centered Research
title_full Merging NMR Data and Computation Facilitates Data-Centered Research
title_fullStr Merging NMR Data and Computation Facilitates Data-Centered Research
title_full_unstemmed Merging NMR Data and Computation Facilitates Data-Centered Research
title_short Merging NMR Data and Computation Facilitates Data-Centered Research
title_sort merging nmr data and computation facilitates data-centered research
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802229/
https://www.ncbi.nlm.nih.gov/pubmed/35111815
http://dx.doi.org/10.3389/fmolb.2021.817175
work_keys_str_mv AT baskarankumaran mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT craftdlevi mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT eghbalniahamidr mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT grykmichaelr mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT hochjeffreyc mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT maciejewskimarkw mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT schuyleradamd mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT wedelljonathanr mergingnmrdataandcomputationfacilitatesdatacenteredresearch
AT wilburncolinw mergingnmrdataandcomputationfacilitatesdatacenteredresearch