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Age‐specific survivorship and fecundity shape genetic diversity in marine fishes

Genetic diversity varies among species due to a range of eco‐evolutionary processes that are not fully understood. The neutral theory predicts that the amount of variation in the genome sequence between different individuals of the same species should increase with its effective population size ([Fo...

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Autores principales: Barry, Pierre, Broquet, Thomas, Gagnaire, Pierre‐Alexandre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802244/
https://www.ncbi.nlm.nih.gov/pubmed/35127137
http://dx.doi.org/10.1002/evl3.265
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author Barry, Pierre
Broquet, Thomas
Gagnaire, Pierre‐Alexandre
author_facet Barry, Pierre
Broquet, Thomas
Gagnaire, Pierre‐Alexandre
author_sort Barry, Pierre
collection PubMed
description Genetic diversity varies among species due to a range of eco‐evolutionary processes that are not fully understood. The neutral theory predicts that the amount of variation in the genome sequence between different individuals of the same species should increase with its effective population size ([Formula: see text]). In real populations, multiple factors that modulate the variance in reproductive success among individuals cause [Formula: see text] to differ from the total number of individuals ([Formula: see text]). Among these, age‐specific mortality and fecundity rates are known to have a direct impact on the [Formula: see text] ratio. However, the extent to which vital rates account for differences in genetic diversity among species remains unknown. Here, we addressed this question by comparing genome‐wide genetic diversity across 16 marine fish species with similar geographic distributions but contrasted lifespan and age‐specific survivorship and fecundity curves. We sequenced the whole genome of 300 individuals to high coverage and assessed their genome‐wide heterozygosity with a reference‐free approach. Genetic diversity varied from 0.2% to 1.4% among species, and showed a negative correlation with adult lifespan, with a large negative effect ([Formula: see text] per additional year of lifespan) that was further increased when brooding species providing intense parental care were removed from the dataset ([Formula: see text] per additional year of lifespan). Using published vital rates for each species, we showed that the [Formula: see text] ratio resulting simply from life tables parameters can predict the observed differences in genetic diversity among species. Using simulations, we further found that the extent of reduction in [Formula: see text] with increasing adult lifespan is particularly strong under Type III survivorship curves (high juvenile and low adult mortality) and increasing fecundity with age, a typical characteristic of marine fishes. Our study highlights the importance of vital rates as key determinants of species genetic diversity levels in nature.
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spelling pubmed-88022442022-02-04 Age‐specific survivorship and fecundity shape genetic diversity in marine fishes Barry, Pierre Broquet, Thomas Gagnaire, Pierre‐Alexandre Evol Lett Letters Genetic diversity varies among species due to a range of eco‐evolutionary processes that are not fully understood. The neutral theory predicts that the amount of variation in the genome sequence between different individuals of the same species should increase with its effective population size ([Formula: see text]). In real populations, multiple factors that modulate the variance in reproductive success among individuals cause [Formula: see text] to differ from the total number of individuals ([Formula: see text]). Among these, age‐specific mortality and fecundity rates are known to have a direct impact on the [Formula: see text] ratio. However, the extent to which vital rates account for differences in genetic diversity among species remains unknown. Here, we addressed this question by comparing genome‐wide genetic diversity across 16 marine fish species with similar geographic distributions but contrasted lifespan and age‐specific survivorship and fecundity curves. We sequenced the whole genome of 300 individuals to high coverage and assessed their genome‐wide heterozygosity with a reference‐free approach. Genetic diversity varied from 0.2% to 1.4% among species, and showed a negative correlation with adult lifespan, with a large negative effect ([Formula: see text] per additional year of lifespan) that was further increased when brooding species providing intense parental care were removed from the dataset ([Formula: see text] per additional year of lifespan). Using published vital rates for each species, we showed that the [Formula: see text] ratio resulting simply from life tables parameters can predict the observed differences in genetic diversity among species. Using simulations, we further found that the extent of reduction in [Formula: see text] with increasing adult lifespan is particularly strong under Type III survivorship curves (high juvenile and low adult mortality) and increasing fecundity with age, a typical characteristic of marine fishes. Our study highlights the importance of vital rates as key determinants of species genetic diversity levels in nature. John Wiley and Sons Inc. 2021-12-24 /pmc/articles/PMC8802244/ /pubmed/35127137 http://dx.doi.org/10.1002/evl3.265 Text en © 2021 The Authors. Evolution Letters published by Wiley Periodicals LLC on behalf of Society for the Study of Evolution (SSE) and European Society for Evolutionary Biology (ESEB). https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Letters
Barry, Pierre
Broquet, Thomas
Gagnaire, Pierre‐Alexandre
Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
title Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
title_full Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
title_fullStr Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
title_full_unstemmed Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
title_short Age‐specific survivorship and fecundity shape genetic diversity in marine fishes
title_sort age‐specific survivorship and fecundity shape genetic diversity in marine fishes
topic Letters
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802244/
https://www.ncbi.nlm.nih.gov/pubmed/35127137
http://dx.doi.org/10.1002/evl3.265
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