Cargando…

Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples

BACKGROUND: Discovery of new Toxoplasma gondii serotyping epitopes is important due to reports showing the influence of genotype on the severity of toxoplasmosis. In Turkey, genotypes belonging to type II, type III and Africa 1 lineages were mainly detected. The present study focused on to find out...

Descripción completa

Detalles Bibliográficos
Autores principales: Can, Hüseyin, Aksoy Gökmen, Ayşegül, Döşkaya, Mert, Erkunt Alak, Sedef, Değirmenci Döşkaya, Aysu, Karakavuk, Muhammet, Köseoğlu, Ahmet Efe, Karakavuk, Tuğba, Gül, Ceren, Güvendi, Mervenur, Gül, Aytül, Gürüz, Adnan Yüksel, Kaya, Selçuk, Mercier, Aurélien, Ün, Cemal
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802539/
https://www.ncbi.nlm.nih.gov/pubmed/35100997
http://dx.doi.org/10.1186/s12879-022-07088-w
_version_ 1784642702347862016
author Can, Hüseyin
Aksoy Gökmen, Ayşegül
Döşkaya, Mert
Erkunt Alak, Sedef
Değirmenci Döşkaya, Aysu
Karakavuk, Muhammet
Köseoğlu, Ahmet Efe
Karakavuk, Tuğba
Gül, Ceren
Güvendi, Mervenur
Gül, Aytül
Gürüz, Adnan Yüksel
Kaya, Selçuk
Mercier, Aurélien
Ün, Cemal
author_facet Can, Hüseyin
Aksoy Gökmen, Ayşegül
Döşkaya, Mert
Erkunt Alak, Sedef
Değirmenci Döşkaya, Aysu
Karakavuk, Muhammet
Köseoğlu, Ahmet Efe
Karakavuk, Tuğba
Gül, Ceren
Güvendi, Mervenur
Gül, Aytül
Gürüz, Adnan Yüksel
Kaya, Selçuk
Mercier, Aurélien
Ün, Cemal
author_sort Can, Hüseyin
collection PubMed
description BACKGROUND: Discovery of new Toxoplasma gondii serotyping epitopes is important due to reports showing the influence of genotype on the severity of toxoplasmosis. In Turkey, genotypes belonging to type II, type III and Africa 1 lineages were mainly detected. The present study focused on to find out epitopes with high discriminative capacity to serotype these genotypes using well characterized strains isolated from Turkey. METHODS: To meet this objective, GRA6 and GRA7 genes were sequenced from strains belonging to the type II, III and Africa 1 lineages, and B cell epitopes inside these sequences were predicted by Bcepred and additional docking analysis was performed with B cell receptor. Based on these analyses, 22 peptides harboring lineage specific epitopes were synthesized. Then, the serotyping potency of these peptides was tested using peptide ELISA and well categorized serum samples collected from stray cats infected with genotypes of the different lineages type II (n:9), III (n:1) and Africa 1 (n:1). As a result of peptide-ELISA, a serotyping schema was constructed with peptides that show high discriminative capacity and this assay was validated by sera collected from humans after an outbreak (n:30) and mother/newborn pair sera (n:3). Later, the validated serotyping schema was used to serotype a larger group of human (n:38) and cat (n:24) sera. RESULTS: Among 22 peptides, GRA6II/c, GRA7III/d, and GRA6 Africa 1/b epitopes have shown discriminative capacity. During the validation of peptide-ELISA, the serotype of toxoplasmosis outbreak and mother/newborn cases were detected to be serotype II. Moreover, the analyses in a larger group showed that serotype II was prevalent in humans and stray cats. CONCLUSIONS: Overall, the results showed that the serotyping schema could be successfully used to serotype T. gondii infections caused by type II, III and Africa 1 genotype.
format Online
Article
Text
id pubmed-8802539
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-88025392022-01-31 Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples Can, Hüseyin Aksoy Gökmen, Ayşegül Döşkaya, Mert Erkunt Alak, Sedef Değirmenci Döşkaya, Aysu Karakavuk, Muhammet Köseoğlu, Ahmet Efe Karakavuk, Tuğba Gül, Ceren Güvendi, Mervenur Gül, Aytül Gürüz, Adnan Yüksel Kaya, Selçuk Mercier, Aurélien Ün, Cemal BMC Infect Dis Research BACKGROUND: Discovery of new Toxoplasma gondii serotyping epitopes is important due to reports showing the influence of genotype on the severity of toxoplasmosis. In Turkey, genotypes belonging to type II, type III and Africa 1 lineages were mainly detected. The present study focused on to find out epitopes with high discriminative capacity to serotype these genotypes using well characterized strains isolated from Turkey. METHODS: To meet this objective, GRA6 and GRA7 genes were sequenced from strains belonging to the type II, III and Africa 1 lineages, and B cell epitopes inside these sequences were predicted by Bcepred and additional docking analysis was performed with B cell receptor. Based on these analyses, 22 peptides harboring lineage specific epitopes were synthesized. Then, the serotyping potency of these peptides was tested using peptide ELISA and well categorized serum samples collected from stray cats infected with genotypes of the different lineages type II (n:9), III (n:1) and Africa 1 (n:1). As a result of peptide-ELISA, a serotyping schema was constructed with peptides that show high discriminative capacity and this assay was validated by sera collected from humans after an outbreak (n:30) and mother/newborn pair sera (n:3). Later, the validated serotyping schema was used to serotype a larger group of human (n:38) and cat (n:24) sera. RESULTS: Among 22 peptides, GRA6II/c, GRA7III/d, and GRA6 Africa 1/b epitopes have shown discriminative capacity. During the validation of peptide-ELISA, the serotype of toxoplasmosis outbreak and mother/newborn cases were detected to be serotype II. Moreover, the analyses in a larger group showed that serotype II was prevalent in humans and stray cats. CONCLUSIONS: Overall, the results showed that the serotyping schema could be successfully used to serotype T. gondii infections caused by type II, III and Africa 1 genotype. BioMed Central 2022-01-31 /pmc/articles/PMC8802539/ /pubmed/35100997 http://dx.doi.org/10.1186/s12879-022-07088-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Can, Hüseyin
Aksoy Gökmen, Ayşegül
Döşkaya, Mert
Erkunt Alak, Sedef
Değirmenci Döşkaya, Aysu
Karakavuk, Muhammet
Köseoğlu, Ahmet Efe
Karakavuk, Tuğba
Gül, Ceren
Güvendi, Mervenur
Gül, Aytül
Gürüz, Adnan Yüksel
Kaya, Selçuk
Mercier, Aurélien
Ün, Cemal
Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
title Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
title_full Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
title_fullStr Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
title_full_unstemmed Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
title_short Development of a new serotyping ELISA for Toxoplasma gondii type II, type III and Africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
title_sort development of a new serotyping elisa for toxoplasma gondii type ii, type iii and africa 1 lineages using in silico peptide discovery methods, well categorized feline and human outbreak serum samples
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8802539/
https://www.ncbi.nlm.nih.gov/pubmed/35100997
http://dx.doi.org/10.1186/s12879-022-07088-w
work_keys_str_mv AT canhuseyin developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT aksoygokmenaysegul developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT doskayamert developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT erkuntalaksedef developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT degirmencidoskayaaysu developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT karakavukmuhammet developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT koseogluahmetefe developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT karakavuktugba developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT gulceren developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT guvendimervenur developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT gulaytul developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT guruzadnanyuksel developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT kayaselcuk developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT mercieraurelien developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples
AT uncemal developmentofanewserotypingelisafortoxoplasmagondiitypeiitypeiiiandafrica1lineagesusinginsilicopeptidediscoverymethodswellcategorizedfelineandhumanoutbreakserumsamples