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The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA
Amorpha californica var. napensis Jeps. 1925, the Napa false indigo, is a threatened shrub endemic to northern California. Here the complete chloroplast genome of topotype material of var. napensis was assembled and characterized to contribute to the bioinformatics, systematics, and conservation of...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2022
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8803116/ https://www.ncbi.nlm.nih.gov/pubmed/35111938 http://dx.doi.org/10.1080/23802359.2022.2029605 |
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| author | Agudelo, Ivan D. Aldaco, Griselda Brito-Pizano, Angel Chavez, Kimberly G. Cortina, Karina G. Flores, Jorge Fuentes, Alejandro Garcia, Adam N. Garcia, Alejandro Gonzalez-Martinez, Daniel Hernandez Ramos, Jennifer Hughey, Jeffery R. Katada, Fernando R. Leon, Felix A. Lopez, Maleny P. Lopez, Sandra Z. Mendoza, Aileen G. Molina, Maritta Muhrram, Asmahan Ortiz-Matias, Daisy Ortiz, Tonantzin E. Pacheco, Alicia Patel, Nandini Ramirez, Paz M. Scaramuzzino, Jennifer L. Soto, Alexandria Stabler, Richard A. Vidauri, Jessica M. Villicana, Jose Yhip, James A. |
| author_facet | Agudelo, Ivan D. Aldaco, Griselda Brito-Pizano, Angel Chavez, Kimberly G. Cortina, Karina G. Flores, Jorge Fuentes, Alejandro Garcia, Adam N. Garcia, Alejandro Gonzalez-Martinez, Daniel Hernandez Ramos, Jennifer Hughey, Jeffery R. Katada, Fernando R. Leon, Felix A. Lopez, Maleny P. Lopez, Sandra Z. Mendoza, Aileen G. Molina, Maritta Muhrram, Asmahan Ortiz-Matias, Daisy Ortiz, Tonantzin E. Pacheco, Alicia Patel, Nandini Ramirez, Paz M. Scaramuzzino, Jennifer L. Soto, Alexandria Stabler, Richard A. Vidauri, Jessica M. Villicana, Jose Yhip, James A. |
| collection | PubMed |
| description | Amorpha californica var. napensis Jeps. 1925, the Napa false indigo, is a threatened shrub endemic to northern California. Here the complete chloroplast genome of topotype material of var. napensis was assembled and characterized to contribute to the bioinformatics, systematics, and conservation of this variety. The chloroplast genome (GenBank accession OK274088) is 158,294 base pairs (bp) in length, encodes 130 genes including 85 protein-coding, 37 tRNA, 8 rRNA, and shows a high-level of gene synteny to other Papilionoideae. Phylogenetic analysis fully resolved var. napensis in a clade with A. fruticosa L. and A. roemeriana Scheele, sister to the Dalbergieae. The newly sequenced chloroplast genome shows that the genetic differences between var. napensis and Amorpha californica Nutt. var. californica are greater than the variation observed between var. napensis and many other Amorpha spp. sequences deposited in GenBank. These data suggest that var. napensis should be elevated to full species rank. |
| format | Online Article Text |
| id | pubmed-8803116 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2022 |
| publisher | Taylor & Francis |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-88031162022-02-01 The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA Agudelo, Ivan D. Aldaco, Griselda Brito-Pizano, Angel Chavez, Kimberly G. Cortina, Karina G. Flores, Jorge Fuentes, Alejandro Garcia, Adam N. Garcia, Alejandro Gonzalez-Martinez, Daniel Hernandez Ramos, Jennifer Hughey, Jeffery R. Katada, Fernando R. Leon, Felix A. Lopez, Maleny P. Lopez, Sandra Z. Mendoza, Aileen G. Molina, Maritta Muhrram, Asmahan Ortiz-Matias, Daisy Ortiz, Tonantzin E. Pacheco, Alicia Patel, Nandini Ramirez, Paz M. Scaramuzzino, Jennifer L. Soto, Alexandria Stabler, Richard A. Vidauri, Jessica M. Villicana, Jose Yhip, James A. Mitochondrial DNA B Resour Mitogenome Announcement Amorpha californica var. napensis Jeps. 1925, the Napa false indigo, is a threatened shrub endemic to northern California. Here the complete chloroplast genome of topotype material of var. napensis was assembled and characterized to contribute to the bioinformatics, systematics, and conservation of this variety. The chloroplast genome (GenBank accession OK274088) is 158,294 base pairs (bp) in length, encodes 130 genes including 85 protein-coding, 37 tRNA, 8 rRNA, and shows a high-level of gene synteny to other Papilionoideae. Phylogenetic analysis fully resolved var. napensis in a clade with A. fruticosa L. and A. roemeriana Scheele, sister to the Dalbergieae. The newly sequenced chloroplast genome shows that the genetic differences between var. napensis and Amorpha californica Nutt. var. californica are greater than the variation observed between var. napensis and many other Amorpha spp. sequences deposited in GenBank. These data suggest that var. napensis should be elevated to full species rank. Taylor & Francis 2022-01-27 /pmc/articles/PMC8803116/ /pubmed/35111938 http://dx.doi.org/10.1080/23802359.2022.2029605 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Mitogenome Announcement Agudelo, Ivan D. Aldaco, Griselda Brito-Pizano, Angel Chavez, Kimberly G. Cortina, Karina G. Flores, Jorge Fuentes, Alejandro Garcia, Adam N. Garcia, Alejandro Gonzalez-Martinez, Daniel Hernandez Ramos, Jennifer Hughey, Jeffery R. Katada, Fernando R. Leon, Felix A. Lopez, Maleny P. Lopez, Sandra Z. Mendoza, Aileen G. Molina, Maritta Muhrram, Asmahan Ortiz-Matias, Daisy Ortiz, Tonantzin E. Pacheco, Alicia Patel, Nandini Ramirez, Paz M. Scaramuzzino, Jennifer L. Soto, Alexandria Stabler, Richard A. Vidauri, Jessica M. Villicana, Jose Yhip, James A. The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA |
| title | The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA |
| title_full | The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA |
| title_fullStr | The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA |
| title_full_unstemmed | The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA |
| title_short | The complete chloroplast genome of the threatened Napa False Indigo Amorpha californica var. napensis Jeps. 1925 (Fabaceae) from Northern California, USA |
| title_sort | complete chloroplast genome of the threatened napa false indigo amorpha californica var. napensis jeps. 1925 (fabaceae) from northern california, usa |
| topic | Mitogenome Announcement |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8803116/ https://www.ncbi.nlm.nih.gov/pubmed/35111938 http://dx.doi.org/10.1080/23802359.2022.2029605 |
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