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Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil
The data included in this article supplement the research article titled “Forest-to-pasture conversion modifies the soil bacterial community in Brazilian dry forest Caatinga (manuscript ID: STOTEN-D-21-19067R1)”. This data article included the analysis of 18 chemical variables in 36 composite sample...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8804183/ https://www.ncbi.nlm.nih.gov/pubmed/35128002 http://dx.doi.org/10.1016/j.dib.2022.107842 |
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author | Costa, Diogo Paes da Araujo, Ademir Sérgio Ferreira Pereira, Arthur Prudêncio de Araujo Mendes, Lucas William França, Rafaela Felix da Silva, Thallyta das Graças Espíndola da Oliveira, Julyana Braga de Araujo, Jenifer Sthephanie Duda, Gustavo Pereira Menezes, Rômulo Simões Cezar Medeiros, Erika Valente de |
author_facet | Costa, Diogo Paes da Araujo, Ademir Sérgio Ferreira Pereira, Arthur Prudêncio de Araujo Mendes, Lucas William França, Rafaela Felix da Silva, Thallyta das Graças Espíndola da Oliveira, Julyana Braga de Araujo, Jenifer Sthephanie Duda, Gustavo Pereira Menezes, Rômulo Simões Cezar Medeiros, Erika Valente de |
author_sort | Costa, Diogo Paes da |
collection | PubMed |
description | The data included in this article supplement the research article titled “Forest-to-pasture conversion modifies the soil bacterial community in Brazilian dry forest Caatinga (manuscript ID: STOTEN-D-21-19067R1)”. This data article included the analysis of 18 chemical variables in 36 composite samples (included 4 replicates) of soils from the Microregion of Garanhuns (Northeast Brazil) and also partial 16S rRNA gene sequences from genomic DNA extracted from 27 of these samples (included 3 best quality replicates) for paired-end sequencing (up to 2 × 300 bp) in Illumina MiSeq platform (NCBI - BioProject accession: PRJNA753707). Soils were collected in August 2018 in a tropical subhumid region from the Brazilian Caatinga, along with 27 composite samples from the aboveground part of pastures to determine nutritional quality based on leaf N content. The analysis of variance (ANOVA) and post-hoc tests of environmental data and the main alpha-diversity indices based on linear mixed models (LMM) were represented in the tables. In this case, the collection region (C1 – Brejão, C2 – Garanhuns, and C3 – São João) was the random-effect variable and adjacent habitats formed by a forest (FO) and two pastures (PA and PB succeeded by this forest) composed the fixed-effect variable (land cover), both nested within C. In addition, a table with similarity percentages breakdown (SIMPER) was also shown, a procedure to assess the average percent contribution of individual phyla and bacterial classes. The figures showed the details of the study location, sampling procedure, vegetation status through the Normalized Difference Vegetation Index (NDVI), in addition to the general abundance and composition of the main bacterial phyla. |
format | Online Article Text |
id | pubmed-8804183 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-88041832022-02-04 Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil Costa, Diogo Paes da Araujo, Ademir Sérgio Ferreira Pereira, Arthur Prudêncio de Araujo Mendes, Lucas William França, Rafaela Felix da Silva, Thallyta das Graças Espíndola da Oliveira, Julyana Braga de Araujo, Jenifer Sthephanie Duda, Gustavo Pereira Menezes, Rômulo Simões Cezar Medeiros, Erika Valente de Data Brief Data Article The data included in this article supplement the research article titled “Forest-to-pasture conversion modifies the soil bacterial community in Brazilian dry forest Caatinga (manuscript ID: STOTEN-D-21-19067R1)”. This data article included the analysis of 18 chemical variables in 36 composite samples (included 4 replicates) of soils from the Microregion of Garanhuns (Northeast Brazil) and also partial 16S rRNA gene sequences from genomic DNA extracted from 27 of these samples (included 3 best quality replicates) for paired-end sequencing (up to 2 × 300 bp) in Illumina MiSeq platform (NCBI - BioProject accession: PRJNA753707). Soils were collected in August 2018 in a tropical subhumid region from the Brazilian Caatinga, along with 27 composite samples from the aboveground part of pastures to determine nutritional quality based on leaf N content. The analysis of variance (ANOVA) and post-hoc tests of environmental data and the main alpha-diversity indices based on linear mixed models (LMM) were represented in the tables. In this case, the collection region (C1 – Brejão, C2 – Garanhuns, and C3 – São João) was the random-effect variable and adjacent habitats formed by a forest (FO) and two pastures (PA and PB succeeded by this forest) composed the fixed-effect variable (land cover), both nested within C. In addition, a table with similarity percentages breakdown (SIMPER) was also shown, a procedure to assess the average percent contribution of individual phyla and bacterial classes. The figures showed the details of the study location, sampling procedure, vegetation status through the Normalized Difference Vegetation Index (NDVI), in addition to the general abundance and composition of the main bacterial phyla. Elsevier 2022-01-19 /pmc/articles/PMC8804183/ /pubmed/35128002 http://dx.doi.org/10.1016/j.dib.2022.107842 Text en © 2022 Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Costa, Diogo Paes da Araujo, Ademir Sérgio Ferreira Pereira, Arthur Prudêncio de Araujo Mendes, Lucas William França, Rafaela Felix da Silva, Thallyta das Graças Espíndola da Oliveira, Julyana Braga de Araujo, Jenifer Sthephanie Duda, Gustavo Pereira Menezes, Rômulo Simões Cezar Medeiros, Erika Valente de Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil |
title | Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil |
title_full | Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil |
title_fullStr | Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil |
title_full_unstemmed | Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil |
title_short | Dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in Northeastern Brazil |
title_sort | dataset for effects of the transition from dry forest to pasture on diversity and structure of bacterial communities in northeastern brazil |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8804183/ https://www.ncbi.nlm.nih.gov/pubmed/35128002 http://dx.doi.org/10.1016/j.dib.2022.107842 |
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