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The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma

Gliomas are malignant tumors that originate from the central nervous system. The aldehyde dehydrogenase family has been documented to affect cancer progression; however, its role in gliomas remains largely unexplored. Bulk RNA-seq analysis and single-cell RNA-Seq analysis were performed to explore t...

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Autores principales: Wang, Zeyu, Mo, Yuyao, Tan, Ying, Wen, Zhihui, Dai, Ziyu, Zhang, Hao, Zhang, Xun, Feng, Songshan, Liang, Xisong, Song, Tao, Cheng, Quan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805082/
https://www.ncbi.nlm.nih.gov/pubmed/35116021
http://dx.doi.org/10.3389/fimmu.2021.756606
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author Wang, Zeyu
Mo, Yuyao
Tan, Ying
Wen, Zhihui
Dai, Ziyu
Zhang, Hao
Zhang, Xun
Feng, Songshan
Liang, Xisong
Song, Tao
Cheng, Quan
author_facet Wang, Zeyu
Mo, Yuyao
Tan, Ying
Wen, Zhihui
Dai, Ziyu
Zhang, Hao
Zhang, Xun
Feng, Songshan
Liang, Xisong
Song, Tao
Cheng, Quan
author_sort Wang, Zeyu
collection PubMed
description Gliomas are malignant tumors that originate from the central nervous system. The aldehyde dehydrogenase family has been documented to affect cancer progression; however, its role in gliomas remains largely unexplored. Bulk RNA-seq analysis and single-cell RNA-Seq analysis were performed to explore the role of the aldehyde dehydrogenases family in gliomas. Training cohort contained The Cancer Genome Atlas data, while data from Chinese Glioma Genome Atlas and Gene Expression Omnibus were set as validation cohorts. Our scoring system based on the aldehyde dehydrogenases family suggested that high-scoring samples were associated with worse survival outcomes. The enrichment score of pathways were calculated by AUCell to substantiate the biofunction prediction results that the aldehyde dehydrogenases family affected glioma progression by modulating tumor cell proliferation, migration, and immune landscape. Tumor immune landscape was mapped from high-scoring samples. Moreover, ALDH3B1 and ALDH16A1, two main contributors of the scoring system, could affect glioblastoma cell proliferation and migration by inducing cell-cycle arrest and the epithelial-mesenchymal transition. Taken together, the aldehyde dehydrogenases family could play a significant role in the tumor immune landscape and could be used to predict patient prognosis. ALDH3B1 and ALDH16A1 could influence tumor cell proliferation and migration.
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spelling pubmed-88050822022-02-02 The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma Wang, Zeyu Mo, Yuyao Tan, Ying Wen, Zhihui Dai, Ziyu Zhang, Hao Zhang, Xun Feng, Songshan Liang, Xisong Song, Tao Cheng, Quan Front Immunol Immunology Gliomas are malignant tumors that originate from the central nervous system. The aldehyde dehydrogenase family has been documented to affect cancer progression; however, its role in gliomas remains largely unexplored. Bulk RNA-seq analysis and single-cell RNA-Seq analysis were performed to explore the role of the aldehyde dehydrogenases family in gliomas. Training cohort contained The Cancer Genome Atlas data, while data from Chinese Glioma Genome Atlas and Gene Expression Omnibus were set as validation cohorts. Our scoring system based on the aldehyde dehydrogenases family suggested that high-scoring samples were associated with worse survival outcomes. The enrichment score of pathways were calculated by AUCell to substantiate the biofunction prediction results that the aldehyde dehydrogenases family affected glioma progression by modulating tumor cell proliferation, migration, and immune landscape. Tumor immune landscape was mapped from high-scoring samples. Moreover, ALDH3B1 and ALDH16A1, two main contributors of the scoring system, could affect glioblastoma cell proliferation and migration by inducing cell-cycle arrest and the epithelial-mesenchymal transition. Taken together, the aldehyde dehydrogenases family could play a significant role in the tumor immune landscape and could be used to predict patient prognosis. ALDH3B1 and ALDH16A1 could influence tumor cell proliferation and migration. Frontiers Media S.A. 2022-01-07 /pmc/articles/PMC8805082/ /pubmed/35116021 http://dx.doi.org/10.3389/fimmu.2021.756606 Text en Copyright © 2022 Wang, Mo, Tan, Wen, Dai, Zhang, Zhang, Feng, Liang, Song and Cheng https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Wang, Zeyu
Mo, Yuyao
Tan, Ying
Wen, Zhihui
Dai, Ziyu
Zhang, Hao
Zhang, Xun
Feng, Songshan
Liang, Xisong
Song, Tao
Cheng, Quan
The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
title The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
title_full The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
title_fullStr The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
title_full_unstemmed The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
title_short The ALDH Family Contributes to Immunocyte Infiltration, Proliferation and Epithelial-Mesenchymal Transformation in Glioma
title_sort aldh family contributes to immunocyte infiltration, proliferation and epithelial-mesenchymal transformation in glioma
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805082/
https://www.ncbi.nlm.nih.gov/pubmed/35116021
http://dx.doi.org/10.3389/fimmu.2021.756606
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