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Determining the oxidation state of elements by X-ray crystallography
Protein-mediated redox reactions play a critical role in many biological processes and often occur at centres that contain metal ions as cofactors. In order to understand the exact mechanisms behind these reactions it is important to not only characterize the three-dimensional structures of these pr...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805299/ https://www.ncbi.nlm.nih.gov/pubmed/35102889 http://dx.doi.org/10.1107/S2059798321013048 |
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author | Lennartz, Frank Jeoung, Jae-Hun Ruenger, Stefan Dobbek, Holger Weiss, Manfred S. |
author_facet | Lennartz, Frank Jeoung, Jae-Hun Ruenger, Stefan Dobbek, Holger Weiss, Manfred S. |
author_sort | Lennartz, Frank |
collection | PubMed |
description | Protein-mediated redox reactions play a critical role in many biological processes and often occur at centres that contain metal ions as cofactors. In order to understand the exact mechanisms behind these reactions it is important to not only characterize the three-dimensional structures of these proteins and their cofactors, but also to identify the oxidation states of the cofactors involved and to correlate this knowledge with structural information. The only suitable approach for this based on crystallographic measurements is spatially resolved anomalous dispersion (SpReAD) refinement, a method that has been used previously to determine the redox states of metals in iron–sulfur cluster-containing proteins. In this article, the feasibility of this approach for small, non-iron–sulfur redox centres is demonstrated by employing SpReAD analysis to characterize Sulfolobus tokodaii sulerythrin, a ruberythrin-like protein that contains a binuclear metal centre. Differences in oxidation states between the individual iron ions of the binuclear metal centre are revealed in sulerythrin crystals treated with H(2)O(2). Furthermore, data collection at high X-ray doses leads to photoreduction of this metal centre, showing that careful control of the total absorbed dose is a prerequisite for successfully determining the oxidation state through SpReAD analysis. |
format | Online Article Text |
id | pubmed-8805299 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-88052992022-02-09 Determining the oxidation state of elements by X-ray crystallography Lennartz, Frank Jeoung, Jae-Hun Ruenger, Stefan Dobbek, Holger Weiss, Manfred S. Acta Crystallogr D Struct Biol Research Papers Protein-mediated redox reactions play a critical role in many biological processes and often occur at centres that contain metal ions as cofactors. In order to understand the exact mechanisms behind these reactions it is important to not only characterize the three-dimensional structures of these proteins and their cofactors, but also to identify the oxidation states of the cofactors involved and to correlate this knowledge with structural information. The only suitable approach for this based on crystallographic measurements is spatially resolved anomalous dispersion (SpReAD) refinement, a method that has been used previously to determine the redox states of metals in iron–sulfur cluster-containing proteins. In this article, the feasibility of this approach for small, non-iron–sulfur redox centres is demonstrated by employing SpReAD analysis to characterize Sulfolobus tokodaii sulerythrin, a ruberythrin-like protein that contains a binuclear metal centre. Differences in oxidation states between the individual iron ions of the binuclear metal centre are revealed in sulerythrin crystals treated with H(2)O(2). Furthermore, data collection at high X-ray doses leads to photoreduction of this metal centre, showing that careful control of the total absorbed dose is a prerequisite for successfully determining the oxidation state through SpReAD analysis. International Union of Crystallography 2022-01-24 /pmc/articles/PMC8805299/ /pubmed/35102889 http://dx.doi.org/10.1107/S2059798321013048 Text en © Frank Lennartz et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Lennartz, Frank Jeoung, Jae-Hun Ruenger, Stefan Dobbek, Holger Weiss, Manfred S. Determining the oxidation state of elements by X-ray crystallography |
title | Determining the oxidation state of elements by X-ray crystallography |
title_full | Determining the oxidation state of elements by X-ray crystallography |
title_fullStr | Determining the oxidation state of elements by X-ray crystallography |
title_full_unstemmed | Determining the oxidation state of elements by X-ray crystallography |
title_short | Determining the oxidation state of elements by X-ray crystallography |
title_sort | determining the oxidation state of elements by x-ray crystallography |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805299/ https://www.ncbi.nlm.nih.gov/pubmed/35102889 http://dx.doi.org/10.1107/S2059798321013048 |
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