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Detecting ice artefacts in processed macromolecular diffraction data with machine learning

Contamination with diffraction from ice crystals can negatively affect, or even impede, macromolecular structure determination, and therefore detecting the resulting artefacts in diffraction data is crucial. However, once the data have been processed it can be very difficult to automatically recogni...

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Autores principales: Nolte, Kristopher, Gao, Yunyun, Stäb, Sabrina, Kollmannsberger, Philip, Thorn, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805301/
https://www.ncbi.nlm.nih.gov/pubmed/35102884
http://dx.doi.org/10.1107/S205979832101202X
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author Nolte, Kristopher
Gao, Yunyun
Stäb, Sabrina
Kollmannsberger, Philip
Thorn, Andrea
author_facet Nolte, Kristopher
Gao, Yunyun
Stäb, Sabrina
Kollmannsberger, Philip
Thorn, Andrea
author_sort Nolte, Kristopher
collection PubMed
description Contamination with diffraction from ice crystals can negatively affect, or even impede, macromolecular structure determination, and therefore detecting the resulting artefacts in diffraction data is crucial. However, once the data have been processed it can be very difficult to automatically recognize this problem. To address this, a set of convolutional neural networks named Helcaraxe has been developed which can detect ice-diffraction artefacts in processed diffraction data from macromolecular crystals. The networks outperform previous algorithms and will be available as part of the AUSPEX web server and the CCP4-distributed software.
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spelling pubmed-88053012022-02-09 Detecting ice artefacts in processed macromolecular diffraction data with machine learning Nolte, Kristopher Gao, Yunyun Stäb, Sabrina Kollmannsberger, Philip Thorn, Andrea Acta Crystallogr D Struct Biol Research Papers Contamination with diffraction from ice crystals can negatively affect, or even impede, macromolecular structure determination, and therefore detecting the resulting artefacts in diffraction data is crucial. However, once the data have been processed it can be very difficult to automatically recognize this problem. To address this, a set of convolutional neural networks named Helcaraxe has been developed which can detect ice-diffraction artefacts in processed diffraction data from macromolecular crystals. The networks outperform previous algorithms and will be available as part of the AUSPEX web server and the CCP4-distributed software. International Union of Crystallography 2022-01-21 /pmc/articles/PMC8805301/ /pubmed/35102884 http://dx.doi.org/10.1107/S205979832101202X Text en © Kristopher Nolte et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Nolte, Kristopher
Gao, Yunyun
Stäb, Sabrina
Kollmannsberger, Philip
Thorn, Andrea
Detecting ice artefacts in processed macromolecular diffraction data with machine learning
title Detecting ice artefacts in processed macromolecular diffraction data with machine learning
title_full Detecting ice artefacts in processed macromolecular diffraction data with machine learning
title_fullStr Detecting ice artefacts in processed macromolecular diffraction data with machine learning
title_full_unstemmed Detecting ice artefacts in processed macromolecular diffraction data with machine learning
title_short Detecting ice artefacts in processed macromolecular diffraction data with machine learning
title_sort detecting ice artefacts in processed macromolecular diffraction data with machine learning
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805301/
https://www.ncbi.nlm.nih.gov/pubmed/35102884
http://dx.doi.org/10.1107/S205979832101202X
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