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Detecting ice artefacts in processed macromolecular diffraction data with machine learning
Contamination with diffraction from ice crystals can negatively affect, or even impede, macromolecular structure determination, and therefore detecting the resulting artefacts in diffraction data is crucial. However, once the data have been processed it can be very difficult to automatically recogni...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805301/ https://www.ncbi.nlm.nih.gov/pubmed/35102884 http://dx.doi.org/10.1107/S205979832101202X |
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author | Nolte, Kristopher Gao, Yunyun Stäb, Sabrina Kollmannsberger, Philip Thorn, Andrea |
author_facet | Nolte, Kristopher Gao, Yunyun Stäb, Sabrina Kollmannsberger, Philip Thorn, Andrea |
author_sort | Nolte, Kristopher |
collection | PubMed |
description | Contamination with diffraction from ice crystals can negatively affect, or even impede, macromolecular structure determination, and therefore detecting the resulting artefacts in diffraction data is crucial. However, once the data have been processed it can be very difficult to automatically recognize this problem. To address this, a set of convolutional neural networks named Helcaraxe has been developed which can detect ice-diffraction artefacts in processed diffraction data from macromolecular crystals. The networks outperform previous algorithms and will be available as part of the AUSPEX web server and the CCP4-distributed software. |
format | Online Article Text |
id | pubmed-8805301 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-88053012022-02-09 Detecting ice artefacts in processed macromolecular diffraction data with machine learning Nolte, Kristopher Gao, Yunyun Stäb, Sabrina Kollmannsberger, Philip Thorn, Andrea Acta Crystallogr D Struct Biol Research Papers Contamination with diffraction from ice crystals can negatively affect, or even impede, macromolecular structure determination, and therefore detecting the resulting artefacts in diffraction data is crucial. However, once the data have been processed it can be very difficult to automatically recognize this problem. To address this, a set of convolutional neural networks named Helcaraxe has been developed which can detect ice-diffraction artefacts in processed diffraction data from macromolecular crystals. The networks outperform previous algorithms and will be available as part of the AUSPEX web server and the CCP4-distributed software. International Union of Crystallography 2022-01-21 /pmc/articles/PMC8805301/ /pubmed/35102884 http://dx.doi.org/10.1107/S205979832101202X Text en © Kristopher Nolte et al. 2022 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Nolte, Kristopher Gao, Yunyun Stäb, Sabrina Kollmannsberger, Philip Thorn, Andrea Detecting ice artefacts in processed macromolecular diffraction data with machine learning |
title | Detecting ice artefacts in processed macromolecular diffraction data with machine learning |
title_full | Detecting ice artefacts in processed macromolecular diffraction data with machine learning |
title_fullStr | Detecting ice artefacts in processed macromolecular diffraction data with machine learning |
title_full_unstemmed | Detecting ice artefacts in processed macromolecular diffraction data with machine learning |
title_short | Detecting ice artefacts in processed macromolecular diffraction data with machine learning |
title_sort | detecting ice artefacts in processed macromolecular diffraction data with machine learning |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805301/ https://www.ncbi.nlm.nih.gov/pubmed/35102884 http://dx.doi.org/10.1107/S205979832101202X |
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