Cargando…

Limited allele-specific gene expression in highly polyploid sugarcane

Polyploidy is widespread in plants, allowing the different copies of genes to be expressed differently in a tissue-specific or developmentally specific way. This allele-specific expression (ASE) has been widely reported, but the proportion and nature of genes showing this characteristic have not bee...

Descripción completa

Detalles Bibliográficos
Autores principales:	Margarido, Gabriel Rodrigues Alves, Correr, Fernando Henrique, Furtado, Agnelo, Botha, Frederik C., Henry, Robert James
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2022
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8805727/ https://www.ncbi.nlm.nih.gov/pubmed/34949669 http://dx.doi.org/10.1101/gr.275904.121

Ejemplares similares

Allele expression biases in mixed-ploid sugarcane accessions
por: Correr, Fernando Henrique, et al.
Publicado: (2022)

Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content
por: Perlo, Virginie, et al.
Publicado: (2022)

De novo assembly and characterizing of the culm-derived meta-transcriptome from the polyploid sugarcane genome based on coding transcripts
por: Hoang, Nam V., et al.
Publicado: (2018)

Association of gene expression with biomass content and composition in sugarcane
por: Hoang, Nam V., et al.
Publicado: (2017)

Organ-specific expression of genes associated with the UDP-glucose metabolism in sugarcane (Saccharum spp. hybrids)
por: Mason, Patrick J., et al.
Publicado: (2023)

A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing
por: Hoang, Nam V., et al.
Publicado: (2017)

Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane
por: Thirugnanasambandam, Prathima P., et al.
Publicado: (2019)

Potential for Genetic Improvement of Sugarcane as a Source of Biomass for Biofuels
por: Hoang, Nam V., et al.
Publicado: (2015)

Transcriptome analysis highlights key differentially expressed genes involved in cellulose and lignin biosynthesis of sugarcane genotypes varying in fiber content
por: Kasirajan, Lakshmi, et al.
Publicado: (2018)

Differential expression in leaves of Saccharum genotypes contrasting in biomass production provides evidence of genes involved in carbon partitioning
por: Correr, Fernando Henrique, et al.
Publicado: (2020)

Metabolic changes in the developing sugarcane culm associated with high yield and early high sugar content
por: Perlo, Virginie, et al.
Publicado: (2020)

Association of variation in the sugarcane transcriptome with sugar content
por: Thirugnanasambandam, Prathima P., et al.
Publicado: (2017)

Sampling strategies for sugarcane using either clonal replicates or diverse genotypes can bias the conclusions of RNA-Seq studies
por: Mello, Victor Hugo, et al.
Publicado: (2023)

Temporal Gene Expression in Apical Culms Shows Early Changes in Cell Wall Biosynthesis Genes in Sugarcane
por: Hosaka, Guilherme Kenichi, et al.
Publicado: (2021)

Variation in sugarcane biomass composition and enzymatic saccharification of leaves, internodes and roots
por: Mason, Patrick J., et al.
Publicado: (2020)

The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns
por: Aono, Alexandre Hild, et al.
Publicado: (2021)

The Long Read Transcriptome of Rice (Oryza sativa ssp. japonica var. Nipponbare) Reveals Novel Transcripts
por: Hasan, Sharmin, et al.
Publicado: (2022)

Mining sequence variations in representative polyploid sugarcane germplasm accessions
por: Yang, Xiping, et al.
Publicado: (2017)

Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop
por: Souza, Glaucia Mendes, et al.
Publicado: (2019)

The Impact of cDNA Normalization on Long-Read Sequencing of a Complex Transcriptome
por: Hoang, Nam V., et al.
Publicado: (2019)

Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane
por: de Oliveira, Lauana Pereira, et al.
Publicado: (2022)

Allele specific expression of Dof genes responding to hormones and abiotic stresses in sugarcane
por: Cai, Mingxing, et al.
Publicado: (2020)

Circadian Rhythms of Sense and Antisense Transcription in Sugarcane, a Highly Polyploid Crop
por: Hotta, Carlos Takeshi, et al.
Publicado: (2013)

Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane
por: Aitken, Karen S, et al.
Publicado: (2014)

Relationship between sugarcane culm and leaf biomass composition and saccharification efficiency
por: Hodgson-Kratky, K., et al.
Publicado: (2019)

Long read transcriptome sequencing of a sugarcane hybrid and its progenitors, Saccharum officinarum and S. spontaneum
por: Thirugnanasambandam, Prathima Perumal, et al.
Publicado: (2023)

Flow cytometric characterisation of the complex polyploid genome of Saccharum officinarum and modern sugarcane cultivars
por: Metcalfe, Cushla J., et al.
Publicado: (2019)

TALEN‐mediated targeted mutagenesis of more than 100 COMT copies/alleles in highly polyploid sugarcane improves saccharification efficiency without compromising biomass yield
por: Kannan, Baskaran, et al.
Publicado: (2017)

New evidence for grain specific C(4) photosynthesis in wheat
por: Rangan, Parimalan, et al.
Publicado: (2016)

Commentary: New evidence for grain specific C(4) photosynthesis in wheat
por: Rangan, Parimalan, et al.
Publicado: (2016)

AllCoPol: inferring allele co-ancestry in polyploids
por: Lautenschlager, Ulrich, et al.
Publicado: (2020)

Fixation dynamics of beneficial alleles in prokaryotic polyploid chromosomes and plasmids
por: Santer, Mario, et al.
Publicado: (2022)

Gene Expression in the Developing Seed of Wild and Domesticated Rice
por: Hasan, Sharmin, et al.
Publicado: (2022)

Improvements in the sequencing and assembly of plant genomes
por: Sharma, Priyanka, et al.
Publicado: (2021)

Highly sex specific gene expression in Jojoba
por: Alsubaie, Bader, et al.
Publicado: (2023)

Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum
por: Vilela, Mariane de Mendonça, et al.
Publicado: (2017)

PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data
por: Voorrips, Roeland E., et al.
Publicado: (2022)

Influence of Gene Expression on Hardness in Wheat
por: Nirmal, Ravi C., et al.
Publicado: (2016)

Direct Chloroplast Sequencing: Comparison of Sequencing Platforms and Analysis Tools for Whole Chloroplast Barcoding
por: Brozynska, Marta, et al.
Publicado: (2014)

Challenges Faced by Highly Polyploid Bacteria with Limits on DNA Inheritance
por: Angert, Esther R
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_4qdf3gvcieuiva9sr5udbsias8