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Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer

Colorectal cancer (CRC) is one of the most common tumors, ranking second in the global cause of death from cancer. The prognosis of advanced patients is still very poor. In this study, hub modules with the highest association with tumor-infiltrating immune cells were identified by weighted gene co-e...

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Autores principales: Liao, Rong, Ma, Qi-Zhi, Zhou, Cong-Ya, Li, Jun-Jun, Weng, Ning-Na, Yang, Yang, Zhu, Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806250/
https://www.ncbi.nlm.nih.gov/pubmed/33960283
http://dx.doi.org/10.1080/21655979.2021.1921551
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author Liao, Rong
Ma, Qi-Zhi
Zhou, Cong-Ya
Li, Jun-Jun
Weng, Ning-Na
Yang, Yang
Zhu, Qing
author_facet Liao, Rong
Ma, Qi-Zhi
Zhou, Cong-Ya
Li, Jun-Jun
Weng, Ning-Na
Yang, Yang
Zhu, Qing
author_sort Liao, Rong
collection PubMed
description Colorectal cancer (CRC) is one of the most common tumors, ranking second in the global cause of death from cancer. The prognosis of advanced patients is still very poor. In this study, hub modules with the highest association with tumor-infiltrating immune cells were identified by weighted gene co-expression network analysis based on CRC expression data from the Gene Expression Omnibus database. Next, three hub genes (ADAM8, IL-1A, VAV3) related to infiltrating immune cells were identified by co-expression network and prognostic analysis. After analysis and verification of the TIMER database, ADAM8 was selected as a prognostic biomarker. Finally, the result of functional test showed that ADAM8 gene expression down-regulation partially reversed the immune tolerance of CRC cells to TILs. By bioinformatics analysis methods and the experimental techniques, we identified ADAM8 as a prognostic biomarker and clinical therapeutic target related to tumor-infiltrating immune cells in CRC.
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spelling pubmed-88062502022-02-02 Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer Liao, Rong Ma, Qi-Zhi Zhou, Cong-Ya Li, Jun-Jun Weng, Ning-Na Yang, Yang Zhu, Qing Bioengineered Research Paper Colorectal cancer (CRC) is one of the most common tumors, ranking second in the global cause of death from cancer. The prognosis of advanced patients is still very poor. In this study, hub modules with the highest association with tumor-infiltrating immune cells were identified by weighted gene co-expression network analysis based on CRC expression data from the Gene Expression Omnibus database. Next, three hub genes (ADAM8, IL-1A, VAV3) related to infiltrating immune cells were identified by co-expression network and prognostic analysis. After analysis and verification of the TIMER database, ADAM8 was selected as a prognostic biomarker. Finally, the result of functional test showed that ADAM8 gene expression down-regulation partially reversed the immune tolerance of CRC cells to TILs. By bioinformatics analysis methods and the experimental techniques, we identified ADAM8 as a prognostic biomarker and clinical therapeutic target related to tumor-infiltrating immune cells in CRC. Taylor & Francis 2021-05-07 /pmc/articles/PMC8806250/ /pubmed/33960283 http://dx.doi.org/10.1080/21655979.2021.1921551 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Paper
Liao, Rong
Ma, Qi-Zhi
Zhou, Cong-Ya
Li, Jun-Jun
Weng, Ning-Na
Yang, Yang
Zhu, Qing
Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer
title Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer
title_full Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer
title_fullStr Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer
title_full_unstemmed Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer
title_short Identification of biomarkers related to Tumor-Infiltrating Lymphocytes (TILs) infiltration with gene co-expression network in colorectal cancer
title_sort identification of biomarkers related to tumor-infiltrating lymphocytes (tils) infiltration with gene co-expression network in colorectal cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806250/
https://www.ncbi.nlm.nih.gov/pubmed/33960283
http://dx.doi.org/10.1080/21655979.2021.1921551
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