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A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
Prostate cancer (PCa) is the most common male reproductive tract malignant tumor, accurate evaluation of PCa characterization and prognostic prediction at diagnosis are vital for the effective administration of the disease, especially at the molecular level. In this study, 48 CpG sites with differen...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806446/ https://www.ncbi.nlm.nih.gov/pubmed/34238128 http://dx.doi.org/10.1080/21655979.2021.1945991 |
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author | Cheng, Wei Cao, Jie xia, Yong Lei, Xin Wu, Lili Shi, Liang |
author_facet | Cheng, Wei Cao, Jie xia, Yong Lei, Xin Wu, Lili Shi, Liang |
author_sort | Cheng, Wei |
collection | PubMed |
description | Prostate cancer (PCa) is the most common male reproductive tract malignant tumor, accurate evaluation of PCa characterization and prognostic prediction at diagnosis are vital for the effective administration of the disease, especially at the molecular level. In this study, 48 CpG sites with differential methylation associated with overall survival (OS) were screened out between PCa and normal adjacent tissues. 16 CpG sites were selected by the least absolute shrinkage and selection operator (LASSO) and the risk score formula for methylated-based classifier was established. For 16-lncRNAs-CpG-classifier, the area under the curve (AUC) were 0.890, 0.917, and 0.932 at 3 years, 5 years and 7 years, respectively. Kaplan–Meier curves indicated that patients with high-risk scores had worse OS than those with low-risk scores. Prognostic methylation model of lncRNAs was identified from the whole genome in patients with PCa. This novel finding provides a novel insight for screening biomarkers of a prognosis for PCa. |
format | Online Article Text |
id | pubmed-8806446 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88064462022-02-02 A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer Cheng, Wei Cao, Jie xia, Yong Lei, Xin Wu, Lili Shi, Liang Bioengineered Research Paper Prostate cancer (PCa) is the most common male reproductive tract malignant tumor, accurate evaluation of PCa characterization and prognostic prediction at diagnosis are vital for the effective administration of the disease, especially at the molecular level. In this study, 48 CpG sites with differential methylation associated with overall survival (OS) were screened out between PCa and normal adjacent tissues. 16 CpG sites were selected by the least absolute shrinkage and selection operator (LASSO) and the risk score formula for methylated-based classifier was established. For 16-lncRNAs-CpG-classifier, the area under the curve (AUC) were 0.890, 0.917, and 0.932 at 3 years, 5 years and 7 years, respectively. Kaplan–Meier curves indicated that patients with high-risk scores had worse OS than those with low-risk scores. Prognostic methylation model of lncRNAs was identified from the whole genome in patients with PCa. This novel finding provides a novel insight for screening biomarkers of a prognosis for PCa. Taylor & Francis 2021-07-08 /pmc/articles/PMC8806446/ /pubmed/34238128 http://dx.doi.org/10.1080/21655979.2021.1945991 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Cheng, Wei Cao, Jie xia, Yong Lei, Xin Wu, Lili Shi, Liang A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer |
title | A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer |
title_full | A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer |
title_fullStr | A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer |
title_full_unstemmed | A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer |
title_short | A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer |
title_sort | dna methylation profile of long non-coding rnas can predict os in prostate cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806446/ https://www.ncbi.nlm.nih.gov/pubmed/34238128 http://dx.doi.org/10.1080/21655979.2021.1945991 |
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