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A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer

Prostate cancer (PCa) is the most common male reproductive tract malignant tumor, accurate evaluation of PCa characterization and prognostic prediction at diagnosis are vital for the effective administration of the disease, especially at the molecular level. In this study, 48 CpG sites with differen...

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Autores principales: Cheng, Wei, Cao, Jie, xia, Yong, Lei, Xin, Wu, Lili, Shi, Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806446/
https://www.ncbi.nlm.nih.gov/pubmed/34238128
http://dx.doi.org/10.1080/21655979.2021.1945991
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author Cheng, Wei
Cao, Jie
xia, Yong
Lei, Xin
Wu, Lili
Shi, Liang
author_facet Cheng, Wei
Cao, Jie
xia, Yong
Lei, Xin
Wu, Lili
Shi, Liang
author_sort Cheng, Wei
collection PubMed
description Prostate cancer (PCa) is the most common male reproductive tract malignant tumor, accurate evaluation of PCa characterization and prognostic prediction at diagnosis are vital for the effective administration of the disease, especially at the molecular level. In this study, 48 CpG sites with differential methylation associated with overall survival (OS) were screened out between PCa and normal adjacent tissues. 16 CpG sites were selected by the least absolute shrinkage and selection operator (LASSO) and the risk score formula for methylated-based classifier was established. For 16-lncRNAs-CpG-classifier, the area under the curve (AUC) were 0.890, 0.917, and 0.932 at 3 years, 5 years and 7 years, respectively. Kaplan–Meier curves indicated that patients with high-risk scores had worse OS than those with low-risk scores. Prognostic methylation model of lncRNAs was identified from the whole genome in patients with PCa. This novel finding provides a novel insight for screening biomarkers of a prognosis for PCa.
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spelling pubmed-88064462022-02-02 A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer Cheng, Wei Cao, Jie xia, Yong Lei, Xin Wu, Lili Shi, Liang Bioengineered Research Paper Prostate cancer (PCa) is the most common male reproductive tract malignant tumor, accurate evaluation of PCa characterization and prognostic prediction at diagnosis are vital for the effective administration of the disease, especially at the molecular level. In this study, 48 CpG sites with differential methylation associated with overall survival (OS) were screened out between PCa and normal adjacent tissues. 16 CpG sites were selected by the least absolute shrinkage and selection operator (LASSO) and the risk score formula for methylated-based classifier was established. For 16-lncRNAs-CpG-classifier, the area under the curve (AUC) were 0.890, 0.917, and 0.932 at 3 years, 5 years and 7 years, respectively. Kaplan–Meier curves indicated that patients with high-risk scores had worse OS than those with low-risk scores. Prognostic methylation model of lncRNAs was identified from the whole genome in patients with PCa. This novel finding provides a novel insight for screening biomarkers of a prognosis for PCa. Taylor & Francis 2021-07-08 /pmc/articles/PMC8806446/ /pubmed/34238128 http://dx.doi.org/10.1080/21655979.2021.1945991 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Paper
Cheng, Wei
Cao, Jie
xia, Yong
Lei, Xin
Wu, Lili
Shi, Liang
A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
title A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
title_full A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
title_fullStr A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
title_full_unstemmed A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
title_short A DNA methylation profile of long non-coding RNAs can predict OS in prostate cancer
title_sort dna methylation profile of long non-coding rnas can predict os in prostate cancer
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806446/
https://www.ncbi.nlm.nih.gov/pubmed/34238128
http://dx.doi.org/10.1080/21655979.2021.1945991
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