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MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer
Uterus Corpus Endometrial cancer (UCEC) is the sixth most common malignant tumor worldwide. In this research, we identified diagnostic and prognostic biomarkers to reflect patients’ immune microenvironment and prognostic. Various data of UCEC patients from the TCGA database were obtained. Firstly, p...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806700/ https://www.ncbi.nlm.nih.gov/pubmed/34252354 http://dx.doi.org/10.1080/21655979.2021.1947940 |
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author | Lu, Nan Liu, Jinhui Ji, Chengjian Wang, Yichun Wu, Zhipeng Yuan, Shuning Xing, Yan Diao, Feiyang |
author_facet | Lu, Nan Liu, Jinhui Ji, Chengjian Wang, Yichun Wu, Zhipeng Yuan, Shuning Xing, Yan Diao, Feiyang |
author_sort | Lu, Nan |
collection | PubMed |
description | Uterus Corpus Endometrial cancer (UCEC) is the sixth most common malignant tumor worldwide. In this research, we identified diagnostic and prognostic biomarkers to reflect patients’ immune microenvironment and prognostic. Various data of UCEC patients from the TCGA database were obtained. Firstly, patients were divided into a high tumor mutation burden (TMB) level group and a low TMB level group according to the level of TMB. Then, differentially expressed miRNAs between the two groups were obtained. LASSO logistic regression analysis was used to construct a diagnostic model to predict the level of TMB. Univariate, multivariate, and LASSO regression analysis were used to construct a prognostic risk signature (PRS) to predict the prognosis of UCEC patients. Twenty-one miRNAs were used to construct a diagnostic model for predicting TMB levels. The AUC values of ROC curves for 21-miRNA-based diagnostic models were 0.911 in the training set, 0.827 in the test set, and 0.878 in the entire set. This diagnostic model showed positive correlation with TMB, PDL1 expression, and the infiltration of immune cells. In addition, three prognostic miRNAs were finally used to construct the PRS. The PRS was related to the expression of multiple immune checkpoints and the infiltration of multiple immune cells. Furthermore, the PRS can also reflect the response to some commonly used chemotherapy regimens. We have established a miRNA-based diagnostic model and a prognostic model that can predict the prognosis of UCEC patients and their response to chemotherapy and immunotherapy, thus providing valuable information on the choice of treatment regimen. |
format | Online Article Text |
id | pubmed-8806700 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88067002022-02-02 MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer Lu, Nan Liu, Jinhui Ji, Chengjian Wang, Yichun Wu, Zhipeng Yuan, Shuning Xing, Yan Diao, Feiyang Bioengineered Research Paper Uterus Corpus Endometrial cancer (UCEC) is the sixth most common malignant tumor worldwide. In this research, we identified diagnostic and prognostic biomarkers to reflect patients’ immune microenvironment and prognostic. Various data of UCEC patients from the TCGA database were obtained. Firstly, patients were divided into a high tumor mutation burden (TMB) level group and a low TMB level group according to the level of TMB. Then, differentially expressed miRNAs between the two groups were obtained. LASSO logistic regression analysis was used to construct a diagnostic model to predict the level of TMB. Univariate, multivariate, and LASSO regression analysis were used to construct a prognostic risk signature (PRS) to predict the prognosis of UCEC patients. Twenty-one miRNAs were used to construct a diagnostic model for predicting TMB levels. The AUC values of ROC curves for 21-miRNA-based diagnostic models were 0.911 in the training set, 0.827 in the test set, and 0.878 in the entire set. This diagnostic model showed positive correlation with TMB, PDL1 expression, and the infiltration of immune cells. In addition, three prognostic miRNAs were finally used to construct the PRS. The PRS was related to the expression of multiple immune checkpoints and the infiltration of multiple immune cells. Furthermore, the PRS can also reflect the response to some commonly used chemotherapy regimens. We have established a miRNA-based diagnostic model and a prognostic model that can predict the prognosis of UCEC patients and their response to chemotherapy and immunotherapy, thus providing valuable information on the choice of treatment regimen. Taylor & Francis 2021-07-12 /pmc/articles/PMC8806700/ /pubmed/34252354 http://dx.doi.org/10.1080/21655979.2021.1947940 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Lu, Nan Liu, Jinhui Ji, Chengjian Wang, Yichun Wu, Zhipeng Yuan, Shuning Xing, Yan Diao, Feiyang MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
title | MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
title_full | MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
title_fullStr | MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
title_full_unstemmed | MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
title_short | MiRNA based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
title_sort | mirna based tumor mutation burden diagnostic and prognostic prediction models for endometrial cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806700/ https://www.ncbi.nlm.nih.gov/pubmed/34252354 http://dx.doi.org/10.1080/21655979.2021.1947940 |
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