Cargando…
A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma
Papillary thyroid carcinoma (PTC) is a highly heterogeneous malignancy with diverse prognoses. Ferroptosis is a new type of cell death dependent on iron. Nevertheless, the predictive ability of ferroptosis-related genes for PTC is unclear. Based on the mRNA expression information from The Cancer Gen...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806743/ https://www.ncbi.nlm.nih.gov/pubmed/34077308 http://dx.doi.org/10.1080/21655979.2021.1935400 |
_version_ | 1784643526528598016 |
---|---|
author | Qian, Xiaoyu Tang, Jian Li, Lin Chen, Ziqiang Chen, Liang Chu, Yongquan |
author_facet | Qian, Xiaoyu Tang, Jian Li, Lin Chen, Ziqiang Chen, Liang Chu, Yongquan |
author_sort | Qian, Xiaoyu |
collection | PubMed |
description | Papillary thyroid carcinoma (PTC) is a highly heterogeneous malignancy with diverse prognoses. Ferroptosis is a new type of cell death dependent on iron. Nevertheless, the predictive ability of ferroptosis-related genes for PTC is unclear. Based on the mRNA expression information from The Cancer Genome Atlas, we compared tumor and normal tissues in terms of the gene expression, for identifying differentially expressed genes (DEGs). Then, the risk score of a 5-gene signature was calculated and a prognostic model was established to test the predictive value of this gene signature by virtue of the LASSO Cox regression. The 5 genes were validated in PTC tissues by RT-qPCR.At last, functional analysis was implemented to investigate the underlying mechanisms. We found a total of 45 ferroptosis-related genes expressed differentially between tumor and normal tissues. 6 DEGs exhibited a significant relevance to the overall survival (OS) (P< 0.05). We classified patients into group with high risk and group with low risk based on the median risk score of a 5-gene signature. Patients in the group with low risk presented a remarkably higher OS relative to the group with high risk (P< 0.01). The Cox regression analysis displayed the independent predictive ability of the risk score. The receiver operating characteristic analysis helped to validate the predictive power owned by the gene signature. After validation, the 5 genes were abnormally expressed between PTC and normal tissues. Functional analysis showed two groups had different immune status. A new ferroptosis-related gene signature can predict the outcomes of PTC patients. |
format | Online Article Text |
id | pubmed-8806743 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88067432022-02-02 A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma Qian, Xiaoyu Tang, Jian Li, Lin Chen, Ziqiang Chen, Liang Chu, Yongquan Bioengineered Research Paper Papillary thyroid carcinoma (PTC) is a highly heterogeneous malignancy with diverse prognoses. Ferroptosis is a new type of cell death dependent on iron. Nevertheless, the predictive ability of ferroptosis-related genes for PTC is unclear. Based on the mRNA expression information from The Cancer Genome Atlas, we compared tumor and normal tissues in terms of the gene expression, for identifying differentially expressed genes (DEGs). Then, the risk score of a 5-gene signature was calculated and a prognostic model was established to test the predictive value of this gene signature by virtue of the LASSO Cox regression. The 5 genes were validated in PTC tissues by RT-qPCR.At last, functional analysis was implemented to investigate the underlying mechanisms. We found a total of 45 ferroptosis-related genes expressed differentially between tumor and normal tissues. 6 DEGs exhibited a significant relevance to the overall survival (OS) (P< 0.05). We classified patients into group with high risk and group with low risk based on the median risk score of a 5-gene signature. Patients in the group with low risk presented a remarkably higher OS relative to the group with high risk (P< 0.01). The Cox regression analysis displayed the independent predictive ability of the risk score. The receiver operating characteristic analysis helped to validate the predictive power owned by the gene signature. After validation, the 5 genes were abnormally expressed between PTC and normal tissues. Functional analysis showed two groups had different immune status. A new ferroptosis-related gene signature can predict the outcomes of PTC patients. Taylor & Francis 2021-06-02 /pmc/articles/PMC8806743/ /pubmed/34077308 http://dx.doi.org/10.1080/21655979.2021.1935400 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Qian, Xiaoyu Tang, Jian Li, Lin Chen, Ziqiang Chen, Liang Chu, Yongquan A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
title | A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
title_full | A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
title_fullStr | A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
title_full_unstemmed | A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
title_short | A new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
title_sort | new ferroptosis-related gene model for prognostic prediction of papillary thyroid carcinoma |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806743/ https://www.ncbi.nlm.nih.gov/pubmed/34077308 http://dx.doi.org/10.1080/21655979.2021.1935400 |
work_keys_str_mv | AT qianxiaoyu anewferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT tangjian anewferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT lilin anewferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT chenziqiang anewferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT chenliang anewferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT chuyongquan anewferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT qianxiaoyu newferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT tangjian newferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT lilin newferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT chenziqiang newferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT chenliang newferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma AT chuyongquan newferroptosisrelatedgenemodelforprognosticpredictionofpapillarythyroidcarcinoma |