Cargando…
A ferroptosis-related gene signature for graft loss prediction following renal allograft
Allogeneic kidney transplantation (renal allograft) is the most effective treatment for advanced kidney disease. Previous studies have indicated that ferroptosis participates in the progression of acute kidney injury and renal transplant failure. However, few studies have evaluated the prognostic va...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806795/ https://www.ncbi.nlm.nih.gov/pubmed/34338139 http://dx.doi.org/10.1080/21655979.2021.1953310 |
_version_ | 1784643541260042240 |
---|---|
author | Fan, Zhenlei Liu, Tao Huang, Hanfei Lin, Jie Zeng, Zhong |
author_facet | Fan, Zhenlei Liu, Tao Huang, Hanfei Lin, Jie Zeng, Zhong |
author_sort | Fan, Zhenlei |
collection | PubMed |
description | Allogeneic kidney transplantation (renal allograft) is the most effective treatment for advanced kidney disease. Previous studies have indicated that ferroptosis participates in the progression of acute kidney injury and renal transplant failure. However, few studies have evaluated the prognostic value of ferroptosis on renal transplantation outcomes. In this study, a total of 22 differentially expressed ferroptosis-related genes (DFGs) were identified, which were mainly enriched in infection-related pathways. Next, a ferroptosis-related gene signature, including GA-binding protein transcription factor subunit beta 1 (GABPB1), cyclin-dependent kinase inhibitor 1A (CDKN1A), Toll-like receptor 4 (TLR4), C-X-C motif chemokine ligand 2 (CXCL2), caveolin 1 (CAV1), and ribonucleotide reductase subunit M2 (RRM2), was constructed to predict graft loss following renal allograft. Moreover, receiver operating characteristic (ROC) curves (area under the ROC curve [AUC] > 0.8) demonstrated the accuracy of the gene signature and univariate Cox analysis suggested that the gene signature could play an independent role in graft loss (p < 0.05). Furthermore, the nomogram and calibration plots also indicated the good prognostic capability of the gene signature. Finally, immune-related and cytokine signaling pathways were mostly enriched in renal allograft patients with poor outcomes. Considered together, a ferroptosis-related gene signature and nomogram based on DFGs were created to predict the 1-, 2- and 3- year graft loss probability of renal allograft patients.The gene signature could serve as a valuable biomarker for predicting graft loss, contributing to improving the outcome of allogeneic kidney transplantation. |
format | Online Article Text |
id | pubmed-8806795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88067952022-02-02 A ferroptosis-related gene signature for graft loss prediction following renal allograft Fan, Zhenlei Liu, Tao Huang, Hanfei Lin, Jie Zeng, Zhong Bioengineered Research Paper Allogeneic kidney transplantation (renal allograft) is the most effective treatment for advanced kidney disease. Previous studies have indicated that ferroptosis participates in the progression of acute kidney injury and renal transplant failure. However, few studies have evaluated the prognostic value of ferroptosis on renal transplantation outcomes. In this study, a total of 22 differentially expressed ferroptosis-related genes (DFGs) were identified, which were mainly enriched in infection-related pathways. Next, a ferroptosis-related gene signature, including GA-binding protein transcription factor subunit beta 1 (GABPB1), cyclin-dependent kinase inhibitor 1A (CDKN1A), Toll-like receptor 4 (TLR4), C-X-C motif chemokine ligand 2 (CXCL2), caveolin 1 (CAV1), and ribonucleotide reductase subunit M2 (RRM2), was constructed to predict graft loss following renal allograft. Moreover, receiver operating characteristic (ROC) curves (area under the ROC curve [AUC] > 0.8) demonstrated the accuracy of the gene signature and univariate Cox analysis suggested that the gene signature could play an independent role in graft loss (p < 0.05). Furthermore, the nomogram and calibration plots also indicated the good prognostic capability of the gene signature. Finally, immune-related and cytokine signaling pathways were mostly enriched in renal allograft patients with poor outcomes. Considered together, a ferroptosis-related gene signature and nomogram based on DFGs were created to predict the 1-, 2- and 3- year graft loss probability of renal allograft patients.The gene signature could serve as a valuable biomarker for predicting graft loss, contributing to improving the outcome of allogeneic kidney transplantation. Taylor & Francis 2021-08-01 /pmc/articles/PMC8806795/ /pubmed/34338139 http://dx.doi.org/10.1080/21655979.2021.1953310 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Fan, Zhenlei Liu, Tao Huang, Hanfei Lin, Jie Zeng, Zhong A ferroptosis-related gene signature for graft loss prediction following renal allograft |
title | A ferroptosis-related gene signature for graft loss prediction following renal allograft |
title_full | A ferroptosis-related gene signature for graft loss prediction following renal allograft |
title_fullStr | A ferroptosis-related gene signature for graft loss prediction following renal allograft |
title_full_unstemmed | A ferroptosis-related gene signature for graft loss prediction following renal allograft |
title_short | A ferroptosis-related gene signature for graft loss prediction following renal allograft |
title_sort | ferroptosis-related gene signature for graft loss prediction following renal allograft |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806795/ https://www.ncbi.nlm.nih.gov/pubmed/34338139 http://dx.doi.org/10.1080/21655979.2021.1953310 |
work_keys_str_mv | AT fanzhenlei aferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT liutao aferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT huanghanfei aferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT linjie aferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT zengzhong aferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT fanzhenlei ferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT liutao ferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT huanghanfei ferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT linjie ferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft AT zengzhong ferroptosisrelatedgenesignatureforgraftlosspredictionfollowingrenalallograft |