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A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes
Cells of the tumor microenvironment exert a vital influence on sarcoma prognosis. This study aimed to analyze and identify differentially expressed genes (DEGs) related to immunity and their significance as immune biomarkers for the accurate prediction of overall survival of patients with sarcoma. T...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806857/ https://www.ncbi.nlm.nih.gov/pubmed/34605725 http://dx.doi.org/10.1080/21655979.2021.1981797 |
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author | Chen, Jiarui Liang, Tuo Cen, Jiemei Jiang, Jie Pan, Shixin Huang, Shengsheng Chen, Liyi Sun, Xuhua Li, Hao Chen, Tianyou Liang, Wei Liao, Shian Yu, Chaojie Yao, Yuanlin Ye, Zhen Chen, Wuhua Guo, Hao Zhan, Xinli Liu, Chong |
author_facet | Chen, Jiarui Liang, Tuo Cen, Jiemei Jiang, Jie Pan, Shixin Huang, Shengsheng Chen, Liyi Sun, Xuhua Li, Hao Chen, Tianyou Liang, Wei Liao, Shian Yu, Chaojie Yao, Yuanlin Ye, Zhen Chen, Wuhua Guo, Hao Zhan, Xinli Liu, Chong |
author_sort | Chen, Jiarui |
collection | PubMed |
description | Cells of the tumor microenvironment exert a vital influence on sarcoma prognosis. This study aimed to analyze and identify differentially expressed genes (DEGs) related to immunity and their significance as immune biomarkers for the accurate prediction of overall survival of patients with sarcoma. The Cancer Genome Atlas was adopted for obtaining sarcoma gene microarray and corresponding clinical information. ESTIMATE algorithm was used to calculate tumor immune microenvironment indices. Immune-associated DEGs were identified using the limma packages and were further analyzed using the ClusterProfiler package and STRING website. Based on the results of these analyses, we constructed a prognostic model. Furthermore, we assessed the prognosis prediction model through functional evaluation and analysis of GSE17674. The functional analysis revealed that the upregulated immune DEGs were related to immune-related aspects. Chemokine ligands/receptors and immune-related genes were found to be vital for sarcoma formation and progression. We established a prognostic signature of seven genes, which indicated that high-risk cases exhibit poor prognostic outcome. The prognostic signature constructed in this study can accurately predict the overall prognosis in patients with sarcoma. Moreover, the novel immune gene expression analysis may provide clinical guidance for predicting prognosis in patients with sarcoma. |
format | Online Article Text |
id | pubmed-8806857 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88068572022-02-02 A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes Chen, Jiarui Liang, Tuo Cen, Jiemei Jiang, Jie Pan, Shixin Huang, Shengsheng Chen, Liyi Sun, Xuhua Li, Hao Chen, Tianyou Liang, Wei Liao, Shian Yu, Chaojie Yao, Yuanlin Ye, Zhen Chen, Wuhua Guo, Hao Zhan, Xinli Liu, Chong Bioengineered Research Paper Cells of the tumor microenvironment exert a vital influence on sarcoma prognosis. This study aimed to analyze and identify differentially expressed genes (DEGs) related to immunity and their significance as immune biomarkers for the accurate prediction of overall survival of patients with sarcoma. The Cancer Genome Atlas was adopted for obtaining sarcoma gene microarray and corresponding clinical information. ESTIMATE algorithm was used to calculate tumor immune microenvironment indices. Immune-associated DEGs were identified using the limma packages and were further analyzed using the ClusterProfiler package and STRING website. Based on the results of these analyses, we constructed a prognostic model. Furthermore, we assessed the prognosis prediction model through functional evaluation and analysis of GSE17674. The functional analysis revealed that the upregulated immune DEGs were related to immune-related aspects. Chemokine ligands/receptors and immune-related genes were found to be vital for sarcoma formation and progression. We established a prognostic signature of seven genes, which indicated that high-risk cases exhibit poor prognostic outcome. The prognostic signature constructed in this study can accurately predict the overall prognosis in patients with sarcoma. Moreover, the novel immune gene expression analysis may provide clinical guidance for predicting prognosis in patients with sarcoma. Taylor & Francis 2021-10-04 /pmc/articles/PMC8806857/ /pubmed/34605725 http://dx.doi.org/10.1080/21655979.2021.1981797 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Paper Chen, Jiarui Liang, Tuo Cen, Jiemei Jiang, Jie Pan, Shixin Huang, Shengsheng Chen, Liyi Sun, Xuhua Li, Hao Chen, Tianyou Liang, Wei Liao, Shian Yu, Chaojie Yao, Yuanlin Ye, Zhen Chen, Wuhua Guo, Hao Zhan, Xinli Liu, Chong A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes |
title | A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes |
title_full | A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes |
title_fullStr | A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes |
title_full_unstemmed | A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes |
title_short | A seven-gene signature and the C–C motif chemokine receptor family genes are the sarcoma-related immune genes |
title_sort | seven-gene signature and the c–c motif chemokine receptor family genes are the sarcoma-related immune genes |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8806857/ https://www.ncbi.nlm.nih.gov/pubmed/34605725 http://dx.doi.org/10.1080/21655979.2021.1981797 |
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