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Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer

Both ferroptosis and lncRNAs are significant for ovarian cancer (OC). Whereas, the study of ferroptosis-related lncRNAs (FRLs) still few in ovarian cancer. We first constructed an FRL-signature for patients with OC in the study. A total of 548 FRLs were identified for univariate Cox regression analy...

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Autores principales: Zheng, Jianfeng, Guo, Jialu, Wang, Yahui, Zheng, Yingling, Zhang, Ke, Tong, Jinyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8807408/
https://www.ncbi.nlm.nih.gov/pubmed/35127813
http://dx.doi.org/10.3389/fmolb.2021.735871
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author Zheng, Jianfeng
Guo, Jialu
Wang, Yahui
Zheng, Yingling
Zhang, Ke
Tong, Jinyi
author_facet Zheng, Jianfeng
Guo, Jialu
Wang, Yahui
Zheng, Yingling
Zhang, Ke
Tong, Jinyi
author_sort Zheng, Jianfeng
collection PubMed
description Both ferroptosis and lncRNAs are significant for ovarian cancer (OC). Whereas, the study of ferroptosis-related lncRNAs (FRLs) still few in ovarian cancer. We first constructed an FRL-signature for patients with OC in the study. A total of 548 FRLs were identified for univariate Cox regression analysis, and 21 FRLs with significant prognosis were identified. The prognostic characteristics of nine FRLs was constructed and validated, showing opposite prognosis in two subgroups based on risk scores. The multivariate Cox regression analysis and nomogram further verified the prognostic value of the risk model. By calculating ferroptosis score through ssGSEA, we found that patients with higher risk scores exhibited higher ferroptosis scores, and high ferroptosis score was a risk factor. There were 40 microenvironment cells with significant differences in the two groups, and the difference of Stromal score between the two groups was statistically significant. Six immune checkpoint genes were expressed at different levels in the two groups. In addition, five m6A regulators (FMR1, HNRNPC, METTL16, METTL3, and METTL5) were higher expressed in the low-risk group. GSEA revealed that the risk model was associated with tumor-related pathways and immune-associated pathway. We compared the sensitivity of chemotherapy drugs between the two risk groups. We also explored the co-expression, ceRNA relation, cis and trans interaction of ferroptosis-related genes and lncRNAs, providing a new idea for the regulatory mechanisms of FRLs. Moreover, the nine FRLs were selected for detecting their expression levels in OC cells and tissues.
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spelling pubmed-88074082022-02-03 Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer Zheng, Jianfeng Guo, Jialu Wang, Yahui Zheng, Yingling Zhang, Ke Tong, Jinyi Front Mol Biosci Molecular Biosciences Both ferroptosis and lncRNAs are significant for ovarian cancer (OC). Whereas, the study of ferroptosis-related lncRNAs (FRLs) still few in ovarian cancer. We first constructed an FRL-signature for patients with OC in the study. A total of 548 FRLs were identified for univariate Cox regression analysis, and 21 FRLs with significant prognosis were identified. The prognostic characteristics of nine FRLs was constructed and validated, showing opposite prognosis in two subgroups based on risk scores. The multivariate Cox regression analysis and nomogram further verified the prognostic value of the risk model. By calculating ferroptosis score through ssGSEA, we found that patients with higher risk scores exhibited higher ferroptosis scores, and high ferroptosis score was a risk factor. There were 40 microenvironment cells with significant differences in the two groups, and the difference of Stromal score between the two groups was statistically significant. Six immune checkpoint genes were expressed at different levels in the two groups. In addition, five m6A regulators (FMR1, HNRNPC, METTL16, METTL3, and METTL5) were higher expressed in the low-risk group. GSEA revealed that the risk model was associated with tumor-related pathways and immune-associated pathway. We compared the sensitivity of chemotherapy drugs between the two risk groups. We also explored the co-expression, ceRNA relation, cis and trans interaction of ferroptosis-related genes and lncRNAs, providing a new idea for the regulatory mechanisms of FRLs. Moreover, the nine FRLs were selected for detecting their expression levels in OC cells and tissues. Frontiers Media S.A. 2022-01-18 /pmc/articles/PMC8807408/ /pubmed/35127813 http://dx.doi.org/10.3389/fmolb.2021.735871 Text en Copyright © 2022 Zheng, Guo, Wang, Zheng, Zhang and Tong. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Zheng, Jianfeng
Guo, Jialu
Wang, Yahui
Zheng, Yingling
Zhang, Ke
Tong, Jinyi
Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer
title Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer
title_full Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer
title_fullStr Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer
title_full_unstemmed Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer
title_short Bioinformatic Analyses of the Ferroptosis-Related lncRNAs Signature for Ovarian Cancer
title_sort bioinformatic analyses of the ferroptosis-related lncrnas signature for ovarian cancer
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8807408/
https://www.ncbi.nlm.nih.gov/pubmed/35127813
http://dx.doi.org/10.3389/fmolb.2021.735871
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