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PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation

The role of PPM1D mutations in de novo gliomagenesis has not been systematically explored. Here we analyze whole genome sequences of 170 pediatric high-grade gliomas and find that truncating mutations in PPM1D that increase the stability of its phosphatase are clonal driver events in 11% of Diffuse...

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Autores principales: Khadka, Prasidda, Reitman, Zachary J., Lu, Sophie, Buchan, Graham, Gionet, Gabrielle, Dubois, Frank, Carvalho, Diana M., Shih, Juliann, Zhang, Shu, Greenwald, Noah F., Zack, Travis, Shapira, Ofer, Pelton, Kristine, Hartley, Rachel, Bear, Heather, Georgis, Yohanna, Jarmale, Spandana, Melanson, Randy, Bonanno, Kevin, Schoolcraft, Kathleen, Miller, Peter G., Condurat, Alexandra L., Gonzalez, Elizabeth M., Qian, Kenin, Morin, Eric, Langhnoja, Jaldeep, Lupien, Leslie E., Rendo, Veronica, Digiacomo, Jeromy, Wang, Dayle, Zhou, Kevin, Kumbhani, Rushil, Guerra Garcia, Maria E., Sinai, Claire E., Becker, Sarah, Schneider, Rachel, Vogelzang, Jayne, Krug, Karsten, Goodale, Amy, Abid, Tanaz, Kalani, Zohra, Piccioni, Federica, Beroukhim, Rameen, Persky, Nicole S., Root, David E., Carcaboso, Angel M., Ebert, Benjamin L., Fuller, Christine, Babur, Ozgun, Kieran, Mark W., Jones, Chris, Keshishian, Hasmik, Ligon, Keith L., Carr, Steven A., Phoenix, Timothy N., Bandopadhayay, Pratiti
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8807747/
https://www.ncbi.nlm.nih.gov/pubmed/35105861
http://dx.doi.org/10.1038/s41467-022-28198-8
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author Khadka, Prasidda
Reitman, Zachary J.
Lu, Sophie
Buchan, Graham
Gionet, Gabrielle
Dubois, Frank
Carvalho, Diana M.
Shih, Juliann
Zhang, Shu
Greenwald, Noah F.
Zack, Travis
Shapira, Ofer
Pelton, Kristine
Hartley, Rachel
Bear, Heather
Georgis, Yohanna
Jarmale, Spandana
Melanson, Randy
Bonanno, Kevin
Schoolcraft, Kathleen
Miller, Peter G.
Condurat, Alexandra L.
Gonzalez, Elizabeth M.
Qian, Kenin
Morin, Eric
Langhnoja, Jaldeep
Lupien, Leslie E.
Rendo, Veronica
Digiacomo, Jeromy
Wang, Dayle
Zhou, Kevin
Kumbhani, Rushil
Guerra Garcia, Maria E.
Sinai, Claire E.
Becker, Sarah
Schneider, Rachel
Vogelzang, Jayne
Krug, Karsten
Goodale, Amy
Abid, Tanaz
Kalani, Zohra
Piccioni, Federica
Beroukhim, Rameen
Persky, Nicole S.
Root, David E.
Carcaboso, Angel M.
Ebert, Benjamin L.
Fuller, Christine
Babur, Ozgun
Kieran, Mark W.
Jones, Chris
Keshishian, Hasmik
Ligon, Keith L.
Carr, Steven A.
Phoenix, Timothy N.
Bandopadhayay, Pratiti
author_facet Khadka, Prasidda
Reitman, Zachary J.
Lu, Sophie
Buchan, Graham
Gionet, Gabrielle
Dubois, Frank
Carvalho, Diana M.
Shih, Juliann
Zhang, Shu
Greenwald, Noah F.
Zack, Travis
Shapira, Ofer
Pelton, Kristine
Hartley, Rachel
Bear, Heather
Georgis, Yohanna
Jarmale, Spandana
Melanson, Randy
Bonanno, Kevin
Schoolcraft, Kathleen
Miller, Peter G.
Condurat, Alexandra L.
Gonzalez, Elizabeth M.
Qian, Kenin
Morin, Eric
Langhnoja, Jaldeep
Lupien, Leslie E.
Rendo, Veronica
Digiacomo, Jeromy
Wang, Dayle
Zhou, Kevin
Kumbhani, Rushil
Guerra Garcia, Maria E.
Sinai, Claire E.
Becker, Sarah
Schneider, Rachel
Vogelzang, Jayne
Krug, Karsten
Goodale, Amy
Abid, Tanaz
Kalani, Zohra
Piccioni, Federica
Beroukhim, Rameen
Persky, Nicole S.
Root, David E.
Carcaboso, Angel M.
Ebert, Benjamin L.
Fuller, Christine
Babur, Ozgun
Kieran, Mark W.
Jones, Chris
Keshishian, Hasmik
Ligon, Keith L.
Carr, Steven A.
Phoenix, Timothy N.
Bandopadhayay, Pratiti
author_sort Khadka, Prasidda
collection PubMed
description The role of PPM1D mutations in de novo gliomagenesis has not been systematically explored. Here we analyze whole genome sequences of 170 pediatric high-grade gliomas and find that truncating mutations in PPM1D that increase the stability of its phosphatase are clonal driver events in 11% of Diffuse Midline Gliomas (DMGs) and are enriched in primary pontine tumors. Through the development of DMG mouse models, we show that PPM1D mutations potentiate gliomagenesis and that PPM1D phosphatase activity is required for in vivo oncogenesis. Finally, we apply integrative phosphoproteomic and functional genomics assays and find that oncogenic effects of PPM1D truncation converge on regulators of cell cycle, DNA damage response, and p53 pathways, revealing therapeutic vulnerabilities including MDM2 inhibition.
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spelling pubmed-88077472022-02-07 PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation Khadka, Prasidda Reitman, Zachary J. Lu, Sophie Buchan, Graham Gionet, Gabrielle Dubois, Frank Carvalho, Diana M. Shih, Juliann Zhang, Shu Greenwald, Noah F. Zack, Travis Shapira, Ofer Pelton, Kristine Hartley, Rachel Bear, Heather Georgis, Yohanna Jarmale, Spandana Melanson, Randy Bonanno, Kevin Schoolcraft, Kathleen Miller, Peter G. Condurat, Alexandra L. Gonzalez, Elizabeth M. Qian, Kenin Morin, Eric Langhnoja, Jaldeep Lupien, Leslie E. Rendo, Veronica Digiacomo, Jeromy Wang, Dayle Zhou, Kevin Kumbhani, Rushil Guerra Garcia, Maria E. Sinai, Claire E. Becker, Sarah Schneider, Rachel Vogelzang, Jayne Krug, Karsten Goodale, Amy Abid, Tanaz Kalani, Zohra Piccioni, Federica Beroukhim, Rameen Persky, Nicole S. Root, David E. Carcaboso, Angel M. Ebert, Benjamin L. Fuller, Christine Babur, Ozgun Kieran, Mark W. Jones, Chris Keshishian, Hasmik Ligon, Keith L. Carr, Steven A. Phoenix, Timothy N. Bandopadhayay, Pratiti Nat Commun Article The role of PPM1D mutations in de novo gliomagenesis has not been systematically explored. Here we analyze whole genome sequences of 170 pediatric high-grade gliomas and find that truncating mutations in PPM1D that increase the stability of its phosphatase are clonal driver events in 11% of Diffuse Midline Gliomas (DMGs) and are enriched in primary pontine tumors. Through the development of DMG mouse models, we show that PPM1D mutations potentiate gliomagenesis and that PPM1D phosphatase activity is required for in vivo oncogenesis. Finally, we apply integrative phosphoproteomic and functional genomics assays and find that oncogenic effects of PPM1D truncation converge on regulators of cell cycle, DNA damage response, and p53 pathways, revealing therapeutic vulnerabilities including MDM2 inhibition. Nature Publishing Group UK 2022-02-01 /pmc/articles/PMC8807747/ /pubmed/35105861 http://dx.doi.org/10.1038/s41467-022-28198-8 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Khadka, Prasidda
Reitman, Zachary J.
Lu, Sophie
Buchan, Graham
Gionet, Gabrielle
Dubois, Frank
Carvalho, Diana M.
Shih, Juliann
Zhang, Shu
Greenwald, Noah F.
Zack, Travis
Shapira, Ofer
Pelton, Kristine
Hartley, Rachel
Bear, Heather
Georgis, Yohanna
Jarmale, Spandana
Melanson, Randy
Bonanno, Kevin
Schoolcraft, Kathleen
Miller, Peter G.
Condurat, Alexandra L.
Gonzalez, Elizabeth M.
Qian, Kenin
Morin, Eric
Langhnoja, Jaldeep
Lupien, Leslie E.
Rendo, Veronica
Digiacomo, Jeromy
Wang, Dayle
Zhou, Kevin
Kumbhani, Rushil
Guerra Garcia, Maria E.
Sinai, Claire E.
Becker, Sarah
Schneider, Rachel
Vogelzang, Jayne
Krug, Karsten
Goodale, Amy
Abid, Tanaz
Kalani, Zohra
Piccioni, Federica
Beroukhim, Rameen
Persky, Nicole S.
Root, David E.
Carcaboso, Angel M.
Ebert, Benjamin L.
Fuller, Christine
Babur, Ozgun
Kieran, Mark W.
Jones, Chris
Keshishian, Hasmik
Ligon, Keith L.
Carr, Steven A.
Phoenix, Timothy N.
Bandopadhayay, Pratiti
PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
title PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
title_full PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
title_fullStr PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
title_full_unstemmed PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
title_short PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation
title_sort ppm1d mutations are oncogenic drivers of de novo diffuse midline glioma formation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8807747/
https://www.ncbi.nlm.nih.gov/pubmed/35105861
http://dx.doi.org/10.1038/s41467-022-28198-8
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