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Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes
Data from manual healthspan assays of the nematode Caenorhabditis elegans (C. elegans) can be complex to quantify. The first attempts to quantify motor performance were done manually, using the so-called thrashing or body bends assay. Some laboratories have automated these approaches using methods t...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8810772/ https://www.ncbi.nlm.nih.gov/pubmed/35110654 http://dx.doi.org/10.1038/s41598-022-05823-6 |
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author | Puchalt, Joan Carles Gonzalez-Rojo, Jose F. Gómez-Escribano, Ana Pilar Vázquez-Manrique, Rafael P. Sánchez-Salmerón, Antonio-José |
author_facet | Puchalt, Joan Carles Gonzalez-Rojo, Jose F. Gómez-Escribano, Ana Pilar Vázquez-Manrique, Rafael P. Sánchez-Salmerón, Antonio-José |
author_sort | Puchalt, Joan Carles |
collection | PubMed |
description | Data from manual healthspan assays of the nematode Caenorhabditis elegans (C. elegans) can be complex to quantify. The first attempts to quantify motor performance were done manually, using the so-called thrashing or body bends assay. Some laboratories have automated these approaches using methods that help substantially to quantify these characteristic movements in small well plates. Even so, it is sometimes difficult to find differences in motor behaviour between strains, and/or between treated vs untreated worms. For this reason, we present here a new automated method that increases the resolution flexibility, in order to capture more movement details in large standard Petri dishes, in such way that those movements are less restricted. This method is based on a Cartesian robot, which enables high-resolution images capture in standard Petri dishes. Several cameras mounted strategically on the robot and working with different fields of view, capture the required C. elegans visual information. We have performed a locomotion-based healthspan experiment with several mutant strains, and we have been able to detect statistically significant differences between two strains that show very similar movement patterns. |
format | Online Article Text |
id | pubmed-8810772 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-88107722022-02-03 Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes Puchalt, Joan Carles Gonzalez-Rojo, Jose F. Gómez-Escribano, Ana Pilar Vázquez-Manrique, Rafael P. Sánchez-Salmerón, Antonio-José Sci Rep Article Data from manual healthspan assays of the nematode Caenorhabditis elegans (C. elegans) can be complex to quantify. The first attempts to quantify motor performance were done manually, using the so-called thrashing or body bends assay. Some laboratories have automated these approaches using methods that help substantially to quantify these characteristic movements in small well plates. Even so, it is sometimes difficult to find differences in motor behaviour between strains, and/or between treated vs untreated worms. For this reason, we present here a new automated method that increases the resolution flexibility, in order to capture more movement details in large standard Petri dishes, in such way that those movements are less restricted. This method is based on a Cartesian robot, which enables high-resolution images capture in standard Petri dishes. Several cameras mounted strategically on the robot and working with different fields of view, capture the required C. elegans visual information. We have performed a locomotion-based healthspan experiment with several mutant strains, and we have been able to detect statistically significant differences between two strains that show very similar movement patterns. Nature Publishing Group UK 2022-02-02 /pmc/articles/PMC8810772/ /pubmed/35110654 http://dx.doi.org/10.1038/s41598-022-05823-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Puchalt, Joan Carles Gonzalez-Rojo, Jose F. Gómez-Escribano, Ana Pilar Vázquez-Manrique, Rafael P. Sánchez-Salmerón, Antonio-José Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes |
title | Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes |
title_full | Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes |
title_fullStr | Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes |
title_full_unstemmed | Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes |
title_short | Multiview motion tracking based on a cartesian robot to monitor Caenorhabditis elegans in standard Petri dishes |
title_sort | multiview motion tracking based on a cartesian robot to monitor caenorhabditis elegans in standard petri dishes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8810772/ https://www.ncbi.nlm.nih.gov/pubmed/35110654 http://dx.doi.org/10.1038/s41598-022-05823-6 |
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