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m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia

Acute myeloid leukemia (AML) is a complex hematologic malignancy. Survival rate of AML patients is low. N6-methyladenosine (m(6)A) and long non-coding RNAs (lncRNAs) play important roles in AML tumorigenesis and progression. However, the relationship between lncRNAs and biological characteristics of...

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Autores principales: Zhong, Fangmin, Yao, Fangyi, Cheng, Ying, Liu, Jing, Zhang, Nan, Li, Shuqi, Li, Meiyong, Huang, Bo, Wang, Xiaozhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8810799/
https://www.ncbi.nlm.nih.gov/pubmed/35110624
http://dx.doi.org/10.1038/s41598-022-05797-5
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author Zhong, Fangmin
Yao, Fangyi
Cheng, Ying
Liu, Jing
Zhang, Nan
Li, Shuqi
Li, Meiyong
Huang, Bo
Wang, Xiaozhong
author_facet Zhong, Fangmin
Yao, Fangyi
Cheng, Ying
Liu, Jing
Zhang, Nan
Li, Shuqi
Li, Meiyong
Huang, Bo
Wang, Xiaozhong
author_sort Zhong, Fangmin
collection PubMed
description Acute myeloid leukemia (AML) is a complex hematologic malignancy. Survival rate of AML patients is low. N6-methyladenosine (m(6)A) and long non-coding RNAs (lncRNAs) play important roles in AML tumorigenesis and progression. However, the relationship between lncRNAs and biological characteristics of AML, as well as how lncRNAs influence the prognosis of AML patients, remain unclear. In this study. In this study, Pearson correlation analysis was used to identify lncRNAs related to m(6)A regulatory genes, namely m(6)A-related lncRNAs. And we analyzed their roles and prognostic values in AML. m(6)A-related lncRNAs associated with patient prognosis were screened using univariate Cox regression analysis, followed by systematic analysis of the relationship between these genes and AML clinicopathologic and biologic characteristics. Furthermore, we examined the characteristics of tumor immune microenvironment (TIME) using different IncRNA clustering models. Using LASSO regression, we identified the risk signals related to prognosis of AML patients. We then constructed and verified a risk model based on m(6)A-related lncRNAs for independent prediction of overall survival in AML patients. Our results indicate that risk scores, calculated based on risk-related signaling, were related to the clinicopathologic characteristics of AML and level of immune infiltration. Finally, we examined the expression level of TRAF3IP2-AS1 in patient samples through real-time polymerase chain reaction analysis and in GEO datasets, and we identified a interaction relationship between SRSF10 and TRAF3IP2-AS1 through in vitro assays. Our study shows that m(6)A-related lncRNAs, evaluated using the risk prediction model, can potentially be used to predict prognosis and design immunotherapy in AML patients.
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spelling pubmed-88107992022-02-03 m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia Zhong, Fangmin Yao, Fangyi Cheng, Ying Liu, Jing Zhang, Nan Li, Shuqi Li, Meiyong Huang, Bo Wang, Xiaozhong Sci Rep Article Acute myeloid leukemia (AML) is a complex hematologic malignancy. Survival rate of AML patients is low. N6-methyladenosine (m(6)A) and long non-coding RNAs (lncRNAs) play important roles in AML tumorigenesis and progression. However, the relationship between lncRNAs and biological characteristics of AML, as well as how lncRNAs influence the prognosis of AML patients, remain unclear. In this study. In this study, Pearson correlation analysis was used to identify lncRNAs related to m(6)A regulatory genes, namely m(6)A-related lncRNAs. And we analyzed their roles and prognostic values in AML. m(6)A-related lncRNAs associated with patient prognosis were screened using univariate Cox regression analysis, followed by systematic analysis of the relationship between these genes and AML clinicopathologic and biologic characteristics. Furthermore, we examined the characteristics of tumor immune microenvironment (TIME) using different IncRNA clustering models. Using LASSO regression, we identified the risk signals related to prognosis of AML patients. We then constructed and verified a risk model based on m(6)A-related lncRNAs for independent prediction of overall survival in AML patients. Our results indicate that risk scores, calculated based on risk-related signaling, were related to the clinicopathologic characteristics of AML and level of immune infiltration. Finally, we examined the expression level of TRAF3IP2-AS1 in patient samples through real-time polymerase chain reaction analysis and in GEO datasets, and we identified a interaction relationship between SRSF10 and TRAF3IP2-AS1 through in vitro assays. Our study shows that m(6)A-related lncRNAs, evaluated using the risk prediction model, can potentially be used to predict prognosis and design immunotherapy in AML patients. Nature Publishing Group UK 2022-02-02 /pmc/articles/PMC8810799/ /pubmed/35110624 http://dx.doi.org/10.1038/s41598-022-05797-5 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhong, Fangmin
Yao, Fangyi
Cheng, Ying
Liu, Jing
Zhang, Nan
Li, Shuqi
Li, Meiyong
Huang, Bo
Wang, Xiaozhong
m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia
title m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia
title_full m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia
title_fullStr m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia
title_full_unstemmed m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia
title_short m6A-related lncRNAs predict prognosis and indicate immune microenvironment in acute myeloid leukemia
title_sort m6a-related lncrnas predict prognosis and indicate immune microenvironment in acute myeloid leukemia
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8810799/
https://www.ncbi.nlm.nih.gov/pubmed/35110624
http://dx.doi.org/10.1038/s41598-022-05797-5
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