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Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study
BACKGROUND: The inability to seamlessly exchange information across radiation therapy ecosystems is a limiting factor in the pursuit of data-driven clinical practice. The implementation of semantic interoperability is a prerequisite for achieving the full capacity of the latest developments in perso...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
JMIR Publications
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8811690/ https://www.ncbi.nlm.nih.gov/pubmed/35044315 http://dx.doi.org/10.2196/27550 |
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author | Cihoric, Nikola Badra, Eugenia Vlaskou Stenger-Weisser, Anna Aebersold, Daniel M Pavic, Matea |
author_facet | Cihoric, Nikola Badra, Eugenia Vlaskou Stenger-Weisser, Anna Aebersold, Daniel M Pavic, Matea |
author_sort | Cihoric, Nikola |
collection | PubMed |
description | BACKGROUND: The inability to seamlessly exchange information across radiation therapy ecosystems is a limiting factor in the pursuit of data-driven clinical practice. The implementation of semantic interoperability is a prerequisite for achieving the full capacity of the latest developments in personalized and precision medicine, such as mathematical modeling, advanced algorithmic information processing, and artificial intelligence approaches. OBJECTIVE: This study aims to evaluate the state of terminology resources (TRs) dedicated to radiation oncology as a prerequisite for an oncology semantic ecosystem. The goal of this cross-sectional analysis is to quantify the state of the art in radiation therapy specific terminology. METHODS: The Unified Medical Language System (UMLS) was searched for the following terms: radio oncology, radiation oncology, radiation therapy, and radiotherapy. We extracted 6509 unique concepts for further analysis. We conducted a quantitative analysis of available source vocabularies (SVs) and analyzed all UMLS SVs according to the route source, number, author, location of authors, license type, the lexical density of TR, and semantic types. Descriptive data are presented as numbers and percentages. RESULTS: The concepts were distributed across 35 SVs. The median number of unique concepts per SV was 5 (range 1-5479), with 14% (5/35) of SVs containing 94.59% (6157/6509) of the concepts. The SVs were created by 29 authors, predominantly legal entities registered in the United States (25/35, 71%), followed by international organizations (6/35, 17%), legal entities registered in Australia (2/35, 6%), and the Netherlands and the United Kingdom with 3% (1/35) of authors each. Of the total 35 SVs, 16 (46%) did not have any restrictions on use, whereas for 19 (54%) of SVs, some level of restriction was required. Overall, 57% (20/35) of SVs were updated within the last 5 years. All concepts found within radiation therapy SVs were labeled with one of the 29 semantic types represented within UMLS. After removing the stop words, the total number of words for all SVs together was 56,219, with a median of 25 unique words per SV (range 3-50,682). The total number of unique words in all SVs was 1048, with a median of 19 unique words per vocabulary (range 3-406). The lexical density for all concepts within all SVs was 0 (0.02 rounded to 2 decimals). Median lexical density per unique SV was 0.7 (range 0.0-1.0). There were no dedicated radiation therapy SVs. CONCLUSIONS: We did not identify any dedicated TRs for radiation oncology. Current terminologies are not sufficient to cover the need of modern radiation oncology practice and research. To achieve a sufficient level of interoperability, of the creation of a new, standardized, universally accepted TR dedicated to modern radiation therapy is required. |
format | Online Article Text |
id | pubmed-8811690 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | JMIR Publications |
record_format | MEDLINE/PubMed |
spelling | pubmed-88116902022-02-04 Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study Cihoric, Nikola Badra, Eugenia Vlaskou Stenger-Weisser, Anna Aebersold, Daniel M Pavic, Matea JMIR Form Res Original Paper BACKGROUND: The inability to seamlessly exchange information across radiation therapy ecosystems is a limiting factor in the pursuit of data-driven clinical practice. The implementation of semantic interoperability is a prerequisite for achieving the full capacity of the latest developments in personalized and precision medicine, such as mathematical modeling, advanced algorithmic information processing, and artificial intelligence approaches. OBJECTIVE: This study aims to evaluate the state of terminology resources (TRs) dedicated to radiation oncology as a prerequisite for an oncology semantic ecosystem. The goal of this cross-sectional analysis is to quantify the state of the art in radiation therapy specific terminology. METHODS: The Unified Medical Language System (UMLS) was searched for the following terms: radio oncology, radiation oncology, radiation therapy, and radiotherapy. We extracted 6509 unique concepts for further analysis. We conducted a quantitative analysis of available source vocabularies (SVs) and analyzed all UMLS SVs according to the route source, number, author, location of authors, license type, the lexical density of TR, and semantic types. Descriptive data are presented as numbers and percentages. RESULTS: The concepts were distributed across 35 SVs. The median number of unique concepts per SV was 5 (range 1-5479), with 14% (5/35) of SVs containing 94.59% (6157/6509) of the concepts. The SVs were created by 29 authors, predominantly legal entities registered in the United States (25/35, 71%), followed by international organizations (6/35, 17%), legal entities registered in Australia (2/35, 6%), and the Netherlands and the United Kingdom with 3% (1/35) of authors each. Of the total 35 SVs, 16 (46%) did not have any restrictions on use, whereas for 19 (54%) of SVs, some level of restriction was required. Overall, 57% (20/35) of SVs were updated within the last 5 years. All concepts found within radiation therapy SVs were labeled with one of the 29 semantic types represented within UMLS. After removing the stop words, the total number of words for all SVs together was 56,219, with a median of 25 unique words per SV (range 3-50,682). The total number of unique words in all SVs was 1048, with a median of 19 unique words per vocabulary (range 3-406). The lexical density for all concepts within all SVs was 0 (0.02 rounded to 2 decimals). Median lexical density per unique SV was 0.7 (range 0.0-1.0). There were no dedicated radiation therapy SVs. CONCLUSIONS: We did not identify any dedicated TRs for radiation oncology. Current terminologies are not sufficient to cover the need of modern radiation oncology practice and research. To achieve a sufficient level of interoperability, of the creation of a new, standardized, universally accepted TR dedicated to modern radiation therapy is required. JMIR Publications 2022-01-19 /pmc/articles/PMC8811690/ /pubmed/35044315 http://dx.doi.org/10.2196/27550 Text en ©Nikola Cihoric, Eugenia Vlaskou Badra, Anna Stenger-Weisser, Daniel M Aebersold, Matea Pavic. Originally published in JMIR Formative Research (https://formative.jmir.org), 19.01.2022. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work, first published in JMIR Formative Research, is properly cited. The complete bibliographic information, a link to the original publication on https://formative.jmir.org, as well as this copyright and license information must be included. |
spellingShingle | Original Paper Cihoric, Nikola Badra, Eugenia Vlaskou Stenger-Weisser, Anna Aebersold, Daniel M Pavic, Matea Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study |
title | Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study |
title_full | Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study |
title_fullStr | Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study |
title_full_unstemmed | Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study |
title_short | Toward Data-Driven Radiation Oncology Using Standardized Terminology as a Starting Point: Cross-sectional Study |
title_sort | toward data-driven radiation oncology using standardized terminology as a starting point: cross-sectional study |
topic | Original Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8811690/ https://www.ncbi.nlm.nih.gov/pubmed/35044315 http://dx.doi.org/10.2196/27550 |
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