Cargando…
The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA
Introduction: White matter hyperintensities of presumed vascular origin (WMH) are an important magnetic resonance imaging marker of cerebral small vessel disease and are associated with cognitive decline, stroke, and mortality. Their relevance in healthy individuals, however, is less clear. This is...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812526/ https://www.ncbi.nlm.nih.gov/pubmed/35126084 http://dx.doi.org/10.3389/fnagi.2021.720636 |
_version_ | 1784644670624628736 |
---|---|
author | Wulms, Niklas Redmann, Lea Herpertz, Christine Bonberg, Nadine Berger, Klaus Sundermann, Benedikt Minnerup, Heike |
author_facet | Wulms, Niklas Redmann, Lea Herpertz, Christine Bonberg, Nadine Berger, Klaus Sundermann, Benedikt Minnerup, Heike |
author_sort | Wulms, Niklas |
collection | PubMed |
description | Introduction: White matter hyperintensities of presumed vascular origin (WMH) are an important magnetic resonance imaging marker of cerebral small vessel disease and are associated with cognitive decline, stroke, and mortality. Their relevance in healthy individuals, however, is less clear. This is partly due to the methodological challenge of accurately measuring rare and small WMH with automated segmentation programs. In this study, we tested whether WMH volumetry with FMRIB software library v6.0 (FSL; https://fsl.fmrib.ox.ac.uk/fsl/fslwiki) Brain Intensity AbNormality Classification Algorithm (BIANCA), a customizable and trainable algorithm that quantifies WMH volume based on individual data training sets, can be optimized for a normal aging population. Methods: We evaluated the effect of varying training sample sizes on the accuracy and the robustness of the predicted white matter hyperintensity volume in a population (n = 201) with a low prevalence of confluent WMH and a substantial proportion of participants without WMH. BIANCA was trained with seven different sample sizes between 10 and 40 with increments of 5. For each sample size, 100 random samples of T1w and FLAIR images were drawn and trained with manually delineated masks. For validation, we defined an internal and external validation set and compared the mean absolute error, resulting from the difference between manually delineated and predicted WMH volumes for each set. For spatial overlap, we calculated the Dice similarity index (SI) for the external validation cohort. Results: The study population had a median WMH volume of 0.34 ml (IQR of 1.6 ml) and included n = 28 (18%) participants without any WMH. The mean absolute error of the difference between BIANCA prediction and manually delineated masks was minimized and became more robust with an increasing number of training participants. The lowest mean absolute error of 0.05 ml (SD of 0.24 ml) was identified in the external validation set with a training sample size of 35. Compared to the volumetric overlap, the spatial overlap was poor with an average Dice similarity index of 0.14 (SD 0.16) in the external cohort, driven by subjects with very low lesion volumes. Discussion: We found that the performance of BIANCA, particularly the robustness of predictions, could be optimized for use in populations with a low WMH load by enlargement of the training sample size. Further work is needed to evaluate and potentially improve the prediction accuracy for low lesion volumes. These findings are important for current and future population-based studies with the majority of participants being normal aging people. |
format | Online Article Text |
id | pubmed-8812526 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88125262022-02-04 The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA Wulms, Niklas Redmann, Lea Herpertz, Christine Bonberg, Nadine Berger, Klaus Sundermann, Benedikt Minnerup, Heike Front Aging Neurosci Aging Neuroscience Introduction: White matter hyperintensities of presumed vascular origin (WMH) are an important magnetic resonance imaging marker of cerebral small vessel disease and are associated with cognitive decline, stroke, and mortality. Their relevance in healthy individuals, however, is less clear. This is partly due to the methodological challenge of accurately measuring rare and small WMH with automated segmentation programs. In this study, we tested whether WMH volumetry with FMRIB software library v6.0 (FSL; https://fsl.fmrib.ox.ac.uk/fsl/fslwiki) Brain Intensity AbNormality Classification Algorithm (BIANCA), a customizable and trainable algorithm that quantifies WMH volume based on individual data training sets, can be optimized for a normal aging population. Methods: We evaluated the effect of varying training sample sizes on the accuracy and the robustness of the predicted white matter hyperintensity volume in a population (n = 201) with a low prevalence of confluent WMH and a substantial proportion of participants without WMH. BIANCA was trained with seven different sample sizes between 10 and 40 with increments of 5. For each sample size, 100 random samples of T1w and FLAIR images were drawn and trained with manually delineated masks. For validation, we defined an internal and external validation set and compared the mean absolute error, resulting from the difference between manually delineated and predicted WMH volumes for each set. For spatial overlap, we calculated the Dice similarity index (SI) for the external validation cohort. Results: The study population had a median WMH volume of 0.34 ml (IQR of 1.6 ml) and included n = 28 (18%) participants without any WMH. The mean absolute error of the difference between BIANCA prediction and manually delineated masks was minimized and became more robust with an increasing number of training participants. The lowest mean absolute error of 0.05 ml (SD of 0.24 ml) was identified in the external validation set with a training sample size of 35. Compared to the volumetric overlap, the spatial overlap was poor with an average Dice similarity index of 0.14 (SD 0.16) in the external cohort, driven by subjects with very low lesion volumes. Discussion: We found that the performance of BIANCA, particularly the robustness of predictions, could be optimized for use in populations with a low WMH load by enlargement of the training sample size. Further work is needed to evaluate and potentially improve the prediction accuracy for low lesion volumes. These findings are important for current and future population-based studies with the majority of participants being normal aging people. Frontiers Media S.A. 2022-01-11 /pmc/articles/PMC8812526/ /pubmed/35126084 http://dx.doi.org/10.3389/fnagi.2021.720636 Text en Copyright © 2022 Wulms, Redmann, Herpertz, Bonberg, Berger, Sundermann and Minnerup. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Aging Neuroscience Wulms, Niklas Redmann, Lea Herpertz, Christine Bonberg, Nadine Berger, Klaus Sundermann, Benedikt Minnerup, Heike The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA |
title | The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA |
title_full | The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA |
title_fullStr | The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA |
title_full_unstemmed | The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA |
title_short | The Effect of Training Sample Size on the Prediction of White Matter Hyperintensity Volume in a Healthy Population Using BIANCA |
title_sort | effect of training sample size on the prediction of white matter hyperintensity volume in a healthy population using bianca |
topic | Aging Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812526/ https://www.ncbi.nlm.nih.gov/pubmed/35126084 http://dx.doi.org/10.3389/fnagi.2021.720636 |
work_keys_str_mv | AT wulmsniklas theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT redmannlea theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT herpertzchristine theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT bonbergnadine theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT bergerklaus theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT sundermannbenedikt theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT minnerupheike theeffectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT wulmsniklas effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT redmannlea effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT herpertzchristine effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT bonbergnadine effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT bergerklaus effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT sundermannbenedikt effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca AT minnerupheike effectoftrainingsamplesizeonthepredictionofwhitematterhyperintensityvolumeinahealthypopulationusingbianca |