The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis

Sonneratia ovata is one of the most widely distributed mangrove species worldwide. In this study, the complete chloroplast (cp) genome of S. ovata was sequenced and assembled; its phylogenetic position was confirmed in Lythraceae. The total size of cp genome was 153,052 bp, exhibiting a typical quad...

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Detalles Bibliográficos
Autores principales: Wang, Shi-Quan, Ren, Feiyan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812736/
https://www.ncbi.nlm.nih.gov/pubmed/35128055
http://dx.doi.org/10.1080/23802359.2021.2008824
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author Wang, Shi-Quan
Ren, Feiyan
author_facet Wang, Shi-Quan
Ren, Feiyan
author_sort Wang, Shi-Quan
collection PubMed
description Sonneratia ovata is one of the most widely distributed mangrove species worldwide. In this study, the complete chloroplast (cp) genome of S. ovata was sequenced and assembled; its phylogenetic position was confirmed in Lythraceae. The total size of cp genome was 153,052 bp, exhibiting a typical quadripartite structure with a large single copy (LSC) region of 87,238 bp and a small single copy (SSC) region of 18,002 bp, two inverted repeats (IRs) regions of 23,906 bp each. The overall GC content was 37.3%, respectively. We detected 128 genes in cp genome, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that S. ovata has a close relationship with S. apetala within the genus Sonneratia.
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spelling pubmed-88127362022-02-04 The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis Wang, Shi-Quan Ren, Feiyan Mitochondrial DNA B Resour Mitogenome Announcement Sonneratia ovata is one of the most widely distributed mangrove species worldwide. In this study, the complete chloroplast (cp) genome of S. ovata was sequenced and assembled; its phylogenetic position was confirmed in Lythraceae. The total size of cp genome was 153,052 bp, exhibiting a typical quadripartite structure with a large single copy (LSC) region of 87,238 bp and a small single copy (SSC) region of 18,002 bp, two inverted repeats (IRs) regions of 23,906 bp each. The overall GC content was 37.3%, respectively. We detected 128 genes in cp genome, including 84 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. A phylogenetic analysis showed that S. ovata has a close relationship with S. apetala within the genus Sonneratia. Taylor & Francis 2022-01-30 /pmc/articles/PMC8812736/ /pubmed/35128055 http://dx.doi.org/10.1080/23802359.2021.2008824 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Shi-Quan
Ren, Feiyan
The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
title The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
title_full The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
title_fullStr The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
title_full_unstemmed The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
title_short The chloroplast genome of Sonneratia ovata: genome structure and comparative analysis
title_sort chloroplast genome of sonneratia ovata: genome structure and comparative analysis
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812736/
https://www.ncbi.nlm.nih.gov/pubmed/35128055
http://dx.doi.org/10.1080/23802359.2021.2008824
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