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A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis

As next-generation pathogen detection methods, CRISPR-Cas-based detection methods can perform single-nucleotide polymorphism (SNP) level detection with high sensitivity and good specificity. They do not require any particular equipment, which opens up new possibilities for the accurate detection and...

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Autores principales: Wang, Dongshu, Chen, Gang, Lyu, Yufei, Feng, Erling, Zhu, Li, Pan, Chao, Zhang, Weicai, Liu, Xiankai, Wang, Hengliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812752/
https://www.ncbi.nlm.nih.gov/pubmed/34842509
http://dx.doi.org/10.1080/22221751.2021.2012091
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author Wang, Dongshu
Chen, Gang
Lyu, Yufei
Feng, Erling
Zhu, Li
Pan, Chao
Zhang, Weicai
Liu, Xiankai
Wang, Hengliang
author_facet Wang, Dongshu
Chen, Gang
Lyu, Yufei
Feng, Erling
Zhu, Li
Pan, Chao
Zhang, Weicai
Liu, Xiankai
Wang, Hengliang
author_sort Wang, Dongshu
collection PubMed
description As next-generation pathogen detection methods, CRISPR-Cas-based detection methods can perform single-nucleotide polymorphism (SNP) level detection with high sensitivity and good specificity. They do not require any particular equipment, which opens up new possibilities for the accurate detection and identification of Bacillus anthracis. In this study, we developed a complete detection system for B. anthracis based on Cas12a. We used two chromosomally located SNP targets and two plasmid targets to identify B. anthracis with high accuracy. The CR5 target is completely new. The entire detection process can be completed within 90 min without electrical power and with single-copy level sensitivity. We also developed an unaided-eye visualization system based on G4-DNAzyme for use with our CRISPR-Cas12a detection system. This visualization system has good prospects for deployment in field-based point-of-care detection. We used the antisense nucleic acid CatG4R as the detection probe, which showed stronger resistance to interference from components of the solution. CatG4R can also be designed as an RNA molecule for adaptation to Cas13a detection, thereby broadening the scope of the detection system.
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spelling pubmed-88127522022-02-04 A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis Wang, Dongshu Chen, Gang Lyu, Yufei Feng, Erling Zhu, Li Pan, Chao Zhang, Weicai Liu, Xiankai Wang, Hengliang Emerg Microbes Infect Research Article As next-generation pathogen detection methods, CRISPR-Cas-based detection methods can perform single-nucleotide polymorphism (SNP) level detection with high sensitivity and good specificity. They do not require any particular equipment, which opens up new possibilities for the accurate detection and identification of Bacillus anthracis. In this study, we developed a complete detection system for B. anthracis based on Cas12a. We used two chromosomally located SNP targets and two plasmid targets to identify B. anthracis with high accuracy. The CR5 target is completely new. The entire detection process can be completed within 90 min without electrical power and with single-copy level sensitivity. We also developed an unaided-eye visualization system based on G4-DNAzyme for use with our CRISPR-Cas12a detection system. This visualization system has good prospects for deployment in field-based point-of-care detection. We used the antisense nucleic acid CatG4R as the detection probe, which showed stronger resistance to interference from components of the solution. CatG4R can also be designed as an RNA molecule for adaptation to Cas13a detection, thereby broadening the scope of the detection system. Taylor & Francis 2022-02-01 /pmc/articles/PMC8812752/ /pubmed/34842509 http://dx.doi.org/10.1080/22221751.2021.2012091 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Wang, Dongshu
Chen, Gang
Lyu, Yufei
Feng, Erling
Zhu, Li
Pan, Chao
Zhang, Weicai
Liu, Xiankai
Wang, Hengliang
A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis
title A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis
title_full A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis
title_fullStr A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis
title_full_unstemmed A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis
title_short A CRISPR/Cas12a-based DNAzyme visualization system for rapid, non-electrically dependent detection of Bacillus anthracis
title_sort crispr/cas12a-based dnazyme visualization system for rapid, non-electrically dependent detection of bacillus anthracis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8812752/
https://www.ncbi.nlm.nih.gov/pubmed/34842509
http://dx.doi.org/10.1080/22221751.2021.2012091
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