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Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments
This database consists of a digital photograph set of soil profiles from the physiographic provinces of the Trans-Mexican Neovolcanic Axis and Sierra Madre del Sur of central Mexico. Although the official and government databases of soil profiles from Mexico do not contain the percentage of coarse f...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8813596/ https://www.ncbi.nlm.nih.gov/pubmed/35141364 http://dx.doi.org/10.1016/j.dib.2021.107749 |
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author | Gallegos, Ángeles Bautista, Francisco |
author_facet | Gallegos, Ángeles Bautista, Francisco |
author_sort | Gallegos, Ángeles |
collection | PubMed |
description | This database consists of a digital photograph set of soil profiles from the physiographic provinces of the Trans-Mexican Neovolcanic Axis and Sierra Madre del Sur of central Mexico. Although the official and government databases of soil profiles from Mexico do not contain the percentage of coarse fragments (stoniness), they contain soil profile photographs from which the percentage of coarse fragments can be extracted. The dataset has two data source types: (a) Soil profile photographs taken in the field and (b) soil profile photographs from the official database of the government of Mexico. The images were analyzed using the Gallegos-Bautista (GB) method. In the GB method, the horizon delineation of the soil profiles includes preprocessing the profile image with k-means segmentation; conversion of the preprocessed image to CIE L*a*b* (lightness, red/green value, blue/yellow value) and HSV (hue, saturation, value) color systems; k-means segmentation of HSV and CIE L*a*b* images, delineation of horizons, and clarity and topography determinations of the outlined horizons. The soil groups studied correspond to the Andosol, Cambisol, Luvisol, Alisol, Kastanozem, Phaeozem, Umbrisol, and Solonchak groups, some of which had contrasting color horizons, allowing us to identify how to follow the analysis of the digital images according to the horizons of the soil profiles. |
format | Online Article Text |
id | pubmed-8813596 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-88135962022-02-08 Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments Gallegos, Ángeles Bautista, Francisco Data Brief Data Article This database consists of a digital photograph set of soil profiles from the physiographic provinces of the Trans-Mexican Neovolcanic Axis and Sierra Madre del Sur of central Mexico. Although the official and government databases of soil profiles from Mexico do not contain the percentage of coarse fragments (stoniness), they contain soil profile photographs from which the percentage of coarse fragments can be extracted. The dataset has two data source types: (a) Soil profile photographs taken in the field and (b) soil profile photographs from the official database of the government of Mexico. The images were analyzed using the Gallegos-Bautista (GB) method. In the GB method, the horizon delineation of the soil profiles includes preprocessing the profile image with k-means segmentation; conversion of the preprocessed image to CIE L*a*b* (lightness, red/green value, blue/yellow value) and HSV (hue, saturation, value) color systems; k-means segmentation of HSV and CIE L*a*b* images, delineation of horizons, and clarity and topography determinations of the outlined horizons. The soil groups studied correspond to the Andosol, Cambisol, Luvisol, Alisol, Kastanozem, Phaeozem, Umbrisol, and Solonchak groups, some of which had contrasting color horizons, allowing us to identify how to follow the analysis of the digital images according to the horizons of the soil profiles. Elsevier 2021-12-23 /pmc/articles/PMC8813596/ /pubmed/35141364 http://dx.doi.org/10.1016/j.dib.2021.107749 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Data Article Gallegos, Ángeles Bautista, Francisco Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments |
title | Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments |
title_full | Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments |
title_fullStr | Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments |
title_full_unstemmed | Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments |
title_short | Soil profile photograph dataset from central Mexico to delineate horizons and quantify coarse fragments |
title_sort | soil profile photograph dataset from central mexico to delineate horizons and quantify coarse fragments |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8813596/ https://www.ncbi.nlm.nih.gov/pubmed/35141364 http://dx.doi.org/10.1016/j.dib.2021.107749 |
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