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First genome-wide association study investigating blood pressure and renal traits in domestic cats

Hypertension (HTN) and chronic kidney disease (CKD) are common in ageing cats. In humans, blood pressure (BP) and renal function are complex heritable traits. We performed the first feline genome-wide association study (GWAS) of quantitative traits systolic BP and creatinine and binary outcomes HTN...

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Autores principales: Jepson, R. E., Warren, H., Wallace, M. D., Syme, H. M., Elliott, J., Munroe, P. B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8813908/
https://www.ncbi.nlm.nih.gov/pubmed/35115544
http://dx.doi.org/10.1038/s41598-022-05494-3
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author Jepson, R. E.
Warren, H.
Wallace, M. D.
Syme, H. M.
Elliott, J.
Munroe, P. B.
author_facet Jepson, R. E.
Warren, H.
Wallace, M. D.
Syme, H. M.
Elliott, J.
Munroe, P. B.
author_sort Jepson, R. E.
collection PubMed
description Hypertension (HTN) and chronic kidney disease (CKD) are common in ageing cats. In humans, blood pressure (BP) and renal function are complex heritable traits. We performed the first feline genome-wide association study (GWAS) of quantitative traits systolic BP and creatinine and binary outcomes HTN and CKD, testing 1022 domestic cats with a discovery, replication and meta-analysis design. No variants reached experimental significance level in the discovery stage for any phenotype. Follow up of the top 9 variants for creatinine and 5 for systolic BP, one SNP reached experimental-wide significance for association with creatinine in the combined meta-analysis (chrD1.10258177; P = 1.34 × 10(–6)). Exploratory genetic risk score (GRS) analyses were performed. Within the discovery sample, GRS of top SNPs from the BP and creatinine GWAS show strong association with HTN and CKD but did not validate in independent replication samples. A GRS including SNPs corresponding to human CKD genes was not significant in an independent subset of cats. Gene-set enrichment and pathway-based analysis (GSEA) was performed for both quantitative phenotypes, with 30 enriched pathways with creatinine. Our results support the utility of GWASs and GSEA for genetic discovery of complex traits in cats, with the caveat of our findings requiring validation.
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spelling pubmed-88139082022-02-07 First genome-wide association study investigating blood pressure and renal traits in domestic cats Jepson, R. E. Warren, H. Wallace, M. D. Syme, H. M. Elliott, J. Munroe, P. B. Sci Rep Article Hypertension (HTN) and chronic kidney disease (CKD) are common in ageing cats. In humans, blood pressure (BP) and renal function are complex heritable traits. We performed the first feline genome-wide association study (GWAS) of quantitative traits systolic BP and creatinine and binary outcomes HTN and CKD, testing 1022 domestic cats with a discovery, replication and meta-analysis design. No variants reached experimental significance level in the discovery stage for any phenotype. Follow up of the top 9 variants for creatinine and 5 for systolic BP, one SNP reached experimental-wide significance for association with creatinine in the combined meta-analysis (chrD1.10258177; P = 1.34 × 10(–6)). Exploratory genetic risk score (GRS) analyses were performed. Within the discovery sample, GRS of top SNPs from the BP and creatinine GWAS show strong association with HTN and CKD but did not validate in independent replication samples. A GRS including SNPs corresponding to human CKD genes was not significant in an independent subset of cats. Gene-set enrichment and pathway-based analysis (GSEA) was performed for both quantitative phenotypes, with 30 enriched pathways with creatinine. Our results support the utility of GWASs and GSEA for genetic discovery of complex traits in cats, with the caveat of our findings requiring validation. Nature Publishing Group UK 2022-02-03 /pmc/articles/PMC8813908/ /pubmed/35115544 http://dx.doi.org/10.1038/s41598-022-05494-3 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Jepson, R. E.
Warren, H.
Wallace, M. D.
Syme, H. M.
Elliott, J.
Munroe, P. B.
First genome-wide association study investigating blood pressure and renal traits in domestic cats
title First genome-wide association study investigating blood pressure and renal traits in domestic cats
title_full First genome-wide association study investigating blood pressure and renal traits in domestic cats
title_fullStr First genome-wide association study investigating blood pressure and renal traits in domestic cats
title_full_unstemmed First genome-wide association study investigating blood pressure and renal traits in domestic cats
title_short First genome-wide association study investigating blood pressure and renal traits in domestic cats
title_sort first genome-wide association study investigating blood pressure and renal traits in domestic cats
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8813908/
https://www.ncbi.nlm.nih.gov/pubmed/35115544
http://dx.doi.org/10.1038/s41598-022-05494-3
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