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Clinical language search algorithm from free-text: facilitating appropriate imaging
BACKGROUND: The comprehensiveness and maintenance of the American College of Radiology (ACR) Appropriateness Criteria (AC) makes it a unique resource for evidence-based clinical imaging decision support, but it is underutilized by clinicians. To facilitate the use of imaging recommendations, we deve...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8815252/ https://www.ncbi.nlm.nih.gov/pubmed/35120466 http://dx.doi.org/10.1186/s12880-022-00740-6 |
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author | Chaudhari, Gunvant R. Chillakuru, Yeshwant R. Chen, Timothy L. Pedoia, Valentina Vu, Thienkhai H. Hess, Christopher P. Seo, Youngho Sohn, Jae Ho |
author_facet | Chaudhari, Gunvant R. Chillakuru, Yeshwant R. Chen, Timothy L. Pedoia, Valentina Vu, Thienkhai H. Hess, Christopher P. Seo, Youngho Sohn, Jae Ho |
author_sort | Chaudhari, Gunvant R. |
collection | PubMed |
description | BACKGROUND: The comprehensiveness and maintenance of the American College of Radiology (ACR) Appropriateness Criteria (AC) makes it a unique resource for evidence-based clinical imaging decision support, but it is underutilized by clinicians. To facilitate the use of imaging recommendations, we develop a natural language processing (NLP) search algorithm that automatically matches clinical indications that physicians write into imaging orders to appropriate AC imaging recommendations. METHODS: We apply a hybrid model of semantic similarity from a sent2vec model trained on 223 million scientific sentences, combined with term frequency inverse document frequency features. AC documents are ranked based on their embeddings’ cosine distance to query. For model testing, we compiled a dataset of simulated simple and complex indications for each AC document (n = 410) and another with clinical indications from randomly sampled radiology reports (n = 100). We compare our algorithm to a custom google search engine. RESULTS: On the simulated indications, our algorithm ranked ground truth documents as top 3 for 98% of simple queries and 85% of complex queries. Similarly, on the randomly sampled radiology report dataset, the algorithm ranked 86% of indications with a single match as top 3. Vague and distracting phrases present in the free-text indications were main sources of errors. Our algorithm provides more relevant results than a custom Google search engine, especially for complex queries. CONCLUSIONS: We have developed and evaluated an NLP algorithm that matches clinical indications to appropriate AC guidelines. This approach can be integrated into imaging ordering systems for automated access to guidelines. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12880-022-00740-6. |
format | Online Article Text |
id | pubmed-8815252 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-88152522022-02-07 Clinical language search algorithm from free-text: facilitating appropriate imaging Chaudhari, Gunvant R. Chillakuru, Yeshwant R. Chen, Timothy L. Pedoia, Valentina Vu, Thienkhai H. Hess, Christopher P. Seo, Youngho Sohn, Jae Ho BMC Med Imaging Research BACKGROUND: The comprehensiveness and maintenance of the American College of Radiology (ACR) Appropriateness Criteria (AC) makes it a unique resource for evidence-based clinical imaging decision support, but it is underutilized by clinicians. To facilitate the use of imaging recommendations, we develop a natural language processing (NLP) search algorithm that automatically matches clinical indications that physicians write into imaging orders to appropriate AC imaging recommendations. METHODS: We apply a hybrid model of semantic similarity from a sent2vec model trained on 223 million scientific sentences, combined with term frequency inverse document frequency features. AC documents are ranked based on their embeddings’ cosine distance to query. For model testing, we compiled a dataset of simulated simple and complex indications for each AC document (n = 410) and another with clinical indications from randomly sampled radiology reports (n = 100). We compare our algorithm to a custom google search engine. RESULTS: On the simulated indications, our algorithm ranked ground truth documents as top 3 for 98% of simple queries and 85% of complex queries. Similarly, on the randomly sampled radiology report dataset, the algorithm ranked 86% of indications with a single match as top 3. Vague and distracting phrases present in the free-text indications were main sources of errors. Our algorithm provides more relevant results than a custom Google search engine, especially for complex queries. CONCLUSIONS: We have developed and evaluated an NLP algorithm that matches clinical indications to appropriate AC guidelines. This approach can be integrated into imaging ordering systems for automated access to guidelines. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12880-022-00740-6. BioMed Central 2022-02-04 /pmc/articles/PMC8815252/ /pubmed/35120466 http://dx.doi.org/10.1186/s12880-022-00740-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Chaudhari, Gunvant R. Chillakuru, Yeshwant R. Chen, Timothy L. Pedoia, Valentina Vu, Thienkhai H. Hess, Christopher P. Seo, Youngho Sohn, Jae Ho Clinical language search algorithm from free-text: facilitating appropriate imaging |
title | Clinical language search algorithm from free-text: facilitating appropriate imaging |
title_full | Clinical language search algorithm from free-text: facilitating appropriate imaging |
title_fullStr | Clinical language search algorithm from free-text: facilitating appropriate imaging |
title_full_unstemmed | Clinical language search algorithm from free-text: facilitating appropriate imaging |
title_short | Clinical language search algorithm from free-text: facilitating appropriate imaging |
title_sort | clinical language search algorithm from free-text: facilitating appropriate imaging |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8815252/ https://www.ncbi.nlm.nih.gov/pubmed/35120466 http://dx.doi.org/10.1186/s12880-022-00740-6 |
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