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Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum

Triosteum pinnatifidum Maxim., an alpine plant, is traditionally used for several medicinal purposes. Here, both chloroplast DNA sequences and nuclear low copy sequence markers were used to investigate the genetic diversity and population structure of T. pinnatifidum. Materials were collected from t...

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Autores principales: Liu, Hai Rui, Khan, Gulzar, Gao, Qingbo, Zhang, Faqi, Liu, Wenhui, Wang, Yingfang, Fang, Jie, Chen, Shilong, Afridi, Sahib Gul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8815373/
https://www.ncbi.nlm.nih.gov/pubmed/35178292
http://dx.doi.org/10.7717/peerj.12754
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author Liu, Hai Rui
Khan, Gulzar
Gao, Qingbo
Zhang, Faqi
Liu, Wenhui
Wang, Yingfang
Fang, Jie
Chen, Shilong
Afridi, Sahib Gul
author_facet Liu, Hai Rui
Khan, Gulzar
Gao, Qingbo
Zhang, Faqi
Liu, Wenhui
Wang, Yingfang
Fang, Jie
Chen, Shilong
Afridi, Sahib Gul
author_sort Liu, Hai Rui
collection PubMed
description Triosteum pinnatifidum Maxim., an alpine plant, is traditionally used for several medicinal purposes. Here, both chloroplast DNA sequences and nuclear low copy sequence markers were used to investigate the genetic diversity and population structure of T. pinnatifidum. Materials were collected from thirteen localities in the northeast Qinghai–Tibet Plateau (QTP) and adjacent highlands and advanced analytical toolkits were used to access their origin and range shifts. The results revealed a higher level of population differentiation based on chloroplast DNA (cpDNA) concatenated sequences compared with the nuclear DNA sequences (F(ST) = 0.654 for cpDNA, F(ST) = 0.398 for AT103), indicating that pollen flow was still extensive in T. pinnatifidum. A decline in haplotype variation was observed from the plateau edge and adjoining highlands toward the platform of the QTP. The hypothesis “dispersal into the QTP,” proposing that T. pinnatifidum experienced migration from the plateau edge and adjacent highlands to the platform, was supported. These results were in line with the hypothesis that multiple refugia exist on the plateau edge and adjacent highlands rather than on the plateau platform. Our unimodal mismatch distribution, star-like network supported a recent expansion in T. pinnatifidum.
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spelling pubmed-88153732022-02-16 Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum Liu, Hai Rui Khan, Gulzar Gao, Qingbo Zhang, Faqi Liu, Wenhui Wang, Yingfang Fang, Jie Chen, Shilong Afridi, Sahib Gul PeerJ Biodiversity Triosteum pinnatifidum Maxim., an alpine plant, is traditionally used for several medicinal purposes. Here, both chloroplast DNA sequences and nuclear low copy sequence markers were used to investigate the genetic diversity and population structure of T. pinnatifidum. Materials were collected from thirteen localities in the northeast Qinghai–Tibet Plateau (QTP) and adjacent highlands and advanced analytical toolkits were used to access their origin and range shifts. The results revealed a higher level of population differentiation based on chloroplast DNA (cpDNA) concatenated sequences compared with the nuclear DNA sequences (F(ST) = 0.654 for cpDNA, F(ST) = 0.398 for AT103), indicating that pollen flow was still extensive in T. pinnatifidum. A decline in haplotype variation was observed from the plateau edge and adjoining highlands toward the platform of the QTP. The hypothesis “dispersal into the QTP,” proposing that T. pinnatifidum experienced migration from the plateau edge and adjacent highlands to the platform, was supported. These results were in line with the hypothesis that multiple refugia exist on the plateau edge and adjacent highlands rather than on the plateau platform. Our unimodal mismatch distribution, star-like network supported a recent expansion in T. pinnatifidum. PeerJ Inc. 2022-02-01 /pmc/articles/PMC8815373/ /pubmed/35178292 http://dx.doi.org/10.7717/peerj.12754 Text en ©2022 Liu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Biodiversity
Liu, Hai Rui
Khan, Gulzar
Gao, Qingbo
Zhang, Faqi
Liu, Wenhui
Wang, Yingfang
Fang, Jie
Chen, Shilong
Afridi, Sahib Gul
Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum
title Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum
title_full Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum
title_fullStr Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum
title_full_unstemmed Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum
title_short Dispersal into the Qinghai–Tibet plateau: evidence from the genetic structure and demography of the alpine plant Triosteum pinnatifidum
title_sort dispersal into the qinghai–tibet plateau: evidence from the genetic structure and demography of the alpine plant triosteum pinnatifidum
topic Biodiversity
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8815373/
https://www.ncbi.nlm.nih.gov/pubmed/35178292
http://dx.doi.org/10.7717/peerj.12754
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