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Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru

Shewanella is a microbial group with high potential to be applied in textile effluents bioremediation due to its ability to use a wide variety of substrates as a final electron acceptor in respiration. The present research aimed to describe a new strain, Shewanella algae 2NE11, a decolorizing bacter...

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Autores principales: Lizárraga, Wendy C., Mormontoy, Carlo G., Calla, Hedersson, Castañeda, Maria, Taira, Mario, Garcia, Ruth, Marín, Claudia, Abanto, Michel, Ramirez, Pablo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8816663/
https://www.ncbi.nlm.nih.gov/pubmed/35145887
http://dx.doi.org/10.1016/j.btre.2022.e00704
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author Lizárraga, Wendy C.
Mormontoy, Carlo G.
Calla, Hedersson
Castañeda, Maria
Taira, Mario
Garcia, Ruth
Marín, Claudia
Abanto, Michel
Ramirez, Pablo
author_facet Lizárraga, Wendy C.
Mormontoy, Carlo G.
Calla, Hedersson
Castañeda, Maria
Taira, Mario
Garcia, Ruth
Marín, Claudia
Abanto, Michel
Ramirez, Pablo
author_sort Lizárraga, Wendy C.
collection PubMed
description Shewanella is a microbial group with high potential to be applied in textile effluents bioremediation due to its ability to use a wide variety of substrates as a final electron acceptor in respiration. The present research aimed to describe a new strain, Shewanella algae 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru. S. algae 2NE11 showed an optimal growth under pH 6-9, temperature between 30-40 °C, and 0-4 % NaCl. It can tolerate high concentrations of NaCl until 10% and low temperatures as 4 °C. It decolorizes azo and anthraquinone dyes with a decolorization rate of 89-97%. We performed next-generation sequencing (Pacific Bioscience®) and achieved its complete genome sequence with a length of 5,030,813bp and a GC content of 52.98%. Genomic characterization revealed the presence of protein-coding genes related to decolorization like azoreductase, dyp-peroxidase, oxidoreductases, and the complete Mtr respiratory pathway. Likewise, we identified other properties such as the presence of metal resistant genes, and genes related to lactate and N-acetylglucosamine metabolism. These results highlight its potential to be applied in the bioremediation of textile effluents and guide future research on decolorization metabolic pathways.
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spelling pubmed-88166632022-02-09 Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru Lizárraga, Wendy C. Mormontoy, Carlo G. Calla, Hedersson Castañeda, Maria Taira, Mario Garcia, Ruth Marín, Claudia Abanto, Michel Ramirez, Pablo Biotechnol Rep (Amst) Research Article Shewanella is a microbial group with high potential to be applied in textile effluents bioremediation due to its ability to use a wide variety of substrates as a final electron acceptor in respiration. The present research aimed to describe a new strain, Shewanella algae 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru. S. algae 2NE11 showed an optimal growth under pH 6-9, temperature between 30-40 °C, and 0-4 % NaCl. It can tolerate high concentrations of NaCl until 10% and low temperatures as 4 °C. It decolorizes azo and anthraquinone dyes with a decolorization rate of 89-97%. We performed next-generation sequencing (Pacific Bioscience®) and achieved its complete genome sequence with a length of 5,030,813bp and a GC content of 52.98%. Genomic characterization revealed the presence of protein-coding genes related to decolorization like azoreductase, dyp-peroxidase, oxidoreductases, and the complete Mtr respiratory pathway. Likewise, we identified other properties such as the presence of metal resistant genes, and genes related to lactate and N-acetylglucosamine metabolism. These results highlight its potential to be applied in the bioremediation of textile effluents and guide future research on decolorization metabolic pathways. Elsevier 2022-01-31 /pmc/articles/PMC8816663/ /pubmed/35145887 http://dx.doi.org/10.1016/j.btre.2022.e00704 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Research Article
Lizárraga, Wendy C.
Mormontoy, Carlo G.
Calla, Hedersson
Castañeda, Maria
Taira, Mario
Garcia, Ruth
Marín, Claudia
Abanto, Michel
Ramirez, Pablo
Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru
title Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru
title_full Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru
title_fullStr Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru
title_full_unstemmed Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru
title_short Complete genome sequence of Shewanella algae strain 2NE11, a decolorizing bacterium isolated from industrial effluent in Peru
title_sort complete genome sequence of shewanella algae strain 2ne11, a decolorizing bacterium isolated from industrial effluent in peru
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8816663/
https://www.ncbi.nlm.nih.gov/pubmed/35145887
http://dx.doi.org/10.1016/j.btre.2022.e00704
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