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Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types

The protein PDLIM2 regulates the stability of various transcription factors and is required for polarized cell migration. However, the clinical relevance and immune infiltration of PDLIM2 in cancer are not well-understood. We utilized The Cancer Genome Atlas and Genotype-Tissue Expression database t...

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Autores principales: Zeng, Yudan, Lin, Dongtao, Gao, Mengqian, Du, Guoxia, Cai, Yongming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8817018/
https://www.ncbi.nlm.nih.gov/pubmed/35121770
http://dx.doi.org/10.1038/s41598-022-05987-1
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author Zeng, Yudan
Lin, Dongtao
Gao, Mengqian
Du, Guoxia
Cai, Yongming
author_facet Zeng, Yudan
Lin, Dongtao
Gao, Mengqian
Du, Guoxia
Cai, Yongming
author_sort Zeng, Yudan
collection PubMed
description The protein PDLIM2 regulates the stability of various transcription factors and is required for polarized cell migration. However, the clinical relevance and immune infiltration of PDLIM2 in cancer are not well-understood. We utilized The Cancer Genome Atlas and Genotype-Tissue Expression database to characterize alterations in PDLIM2 in pan-cancer. TIMER was used to explore PDLIM2 expression and immune infiltration levels. We assessed the correlation between PDLIM2 expression and immune-associated gene expression, immune score, tumor mutation burden, and DNA microsatellite instability. PDLIM2 significantly affected the prognosis of various cancers. Increased expression of PDLIM2 was significantly correlated with the tumor grade in seven types of tumors. The expression level of PDLIM2 was positively correlated with immune infiltrates, including B cells, CD8+ T cells, CD4+ T cells, neutrophils, macrophages, and dendritic cells in bladder urothelial, kidney renal papillary cell, and colon adenocarcinoma. High expression levels of PDLIM2 tended to be associated with higher immune and stromal scores. PDLIM2 expression was associated with the tumor mutation burden in 12 cancer types and microsatellite instability in 5 cancer types. PDLIM2 levels were strongly correlated with diverse immune-related genes. PDLIM2 can act as a prognostic-related therapeutic target and is correlated with immune infiltrates in pan-cancer.
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spelling pubmed-88170182022-02-09 Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types Zeng, Yudan Lin, Dongtao Gao, Mengqian Du, Guoxia Cai, Yongming Sci Rep Article The protein PDLIM2 regulates the stability of various transcription factors and is required for polarized cell migration. However, the clinical relevance and immune infiltration of PDLIM2 in cancer are not well-understood. We utilized The Cancer Genome Atlas and Genotype-Tissue Expression database to characterize alterations in PDLIM2 in pan-cancer. TIMER was used to explore PDLIM2 expression and immune infiltration levels. We assessed the correlation between PDLIM2 expression and immune-associated gene expression, immune score, tumor mutation burden, and DNA microsatellite instability. PDLIM2 significantly affected the prognosis of various cancers. Increased expression of PDLIM2 was significantly correlated with the tumor grade in seven types of tumors. The expression level of PDLIM2 was positively correlated with immune infiltrates, including B cells, CD8+ T cells, CD4+ T cells, neutrophils, macrophages, and dendritic cells in bladder urothelial, kidney renal papillary cell, and colon adenocarcinoma. High expression levels of PDLIM2 tended to be associated with higher immune and stromal scores. PDLIM2 expression was associated with the tumor mutation burden in 12 cancer types and microsatellite instability in 5 cancer types. PDLIM2 levels were strongly correlated with diverse immune-related genes. PDLIM2 can act as a prognostic-related therapeutic target and is correlated with immune infiltrates in pan-cancer. Nature Publishing Group UK 2022-02-04 /pmc/articles/PMC8817018/ /pubmed/35121770 http://dx.doi.org/10.1038/s41598-022-05987-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zeng, Yudan
Lin, Dongtao
Gao, Mengqian
Du, Guoxia
Cai, Yongming
Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
title Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
title_full Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
title_fullStr Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
title_full_unstemmed Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
title_short Systematic evaluation of the prognostic and immunological role of PDLIM2 across 33 cancer types
title_sort systematic evaluation of the prognostic and immunological role of pdlim2 across 33 cancer types
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8817018/
https://www.ncbi.nlm.nih.gov/pubmed/35121770
http://dx.doi.org/10.1038/s41598-022-05987-1
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