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Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
Evidence has been emerging of the importance of long non‐coding RNAs (lncRNAs) in genome instability. However, no study has established how to classify such lncRNAs linked to genomic instability, and whether that connection poses a therapeutic significance. Here, we established a computational frame...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8817082/ https://www.ncbi.nlm.nih.gov/pubmed/34866362 http://dx.doi.org/10.1002/cam4.4471 |
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author | Guo, Chen‐Rui Mao, Yan Jiang, Feng Juan, Chen‐Xia Zhou, Guo‐Ping Li, Ning |
author_facet | Guo, Chen‐Rui Mao, Yan Jiang, Feng Juan, Chen‐Xia Zhou, Guo‐Ping Li, Ning |
author_sort | Guo, Chen‐Rui |
collection | PubMed |
description | Evidence has been emerging of the importance of long non‐coding RNAs (lncRNAs) in genome instability. However, no study has established how to classify such lncRNAs linked to genomic instability, and whether that connection poses a therapeutic significance. Here, we established a computational frame derived from mutator hypothesis by combining profiles of lncRNA expression and those of somatic mutations in a tumor genome, and identified 185 candidate lncRNAs associated with genomic instability in lung adenocarcinoma (LUAD). Through further studies, we established a six lncRNA‐based signature, which assigned patients to the high‐ and low‐risk groups with different prognosis. Further validation of this signature was performed in a number of separate cohorts of LUAD patients. In addition, the signature was found closely linked to genomic mutation rates in patients, indicating it could be a useful way to quantify genomic instability. In summary, this research offered a novel method by through which more studies may explore the function of lncRNAs and presented a possible new way for detecting biomarkers associated with genomic instability in cancers. |
format | Online Article Text |
id | pubmed-8817082 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88170822022-02-08 Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma Guo, Chen‐Rui Mao, Yan Jiang, Feng Juan, Chen‐Xia Zhou, Guo‐Ping Li, Ning Cancer Med Bioinformatics Evidence has been emerging of the importance of long non‐coding RNAs (lncRNAs) in genome instability. However, no study has established how to classify such lncRNAs linked to genomic instability, and whether that connection poses a therapeutic significance. Here, we established a computational frame derived from mutator hypothesis by combining profiles of lncRNA expression and those of somatic mutations in a tumor genome, and identified 185 candidate lncRNAs associated with genomic instability in lung adenocarcinoma (LUAD). Through further studies, we established a six lncRNA‐based signature, which assigned patients to the high‐ and low‐risk groups with different prognosis. Further validation of this signature was performed in a number of separate cohorts of LUAD patients. In addition, the signature was found closely linked to genomic mutation rates in patients, indicating it could be a useful way to quantify genomic instability. In summary, this research offered a novel method by through which more studies may explore the function of lncRNAs and presented a possible new way for detecting biomarkers associated with genomic instability in cancers. John Wiley and Sons Inc. 2021-12-05 /pmc/articles/PMC8817082/ /pubmed/34866362 http://dx.doi.org/10.1002/cam4.4471 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Bioinformatics Guo, Chen‐Rui Mao, Yan Jiang, Feng Juan, Chen‐Xia Zhou, Guo‐Ping Li, Ning Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma |
title | Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma |
title_full | Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma |
title_fullStr | Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma |
title_full_unstemmed | Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma |
title_short | Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma |
title_sort | computational detection of a genome instability‐derived lncrna signature for predicting the clinical outcome of lung adenocarcinoma |
topic | Bioinformatics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8817082/ https://www.ncbi.nlm.nih.gov/pubmed/34866362 http://dx.doi.org/10.1002/cam4.4471 |
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