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Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma

Evidence has been emerging of the importance of long non‐coding RNAs (lncRNAs) in genome instability. However, no study has established how to classify such lncRNAs linked to genomic instability, and whether that connection poses a therapeutic significance. Here, we established a computational frame...

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Autores principales: Guo, Chen‐Rui, Mao, Yan, Jiang, Feng, Juan, Chen‐Xia, Zhou, Guo‐Ping, Li, Ning
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8817082/
https://www.ncbi.nlm.nih.gov/pubmed/34866362
http://dx.doi.org/10.1002/cam4.4471
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author Guo, Chen‐Rui
Mao, Yan
Jiang, Feng
Juan, Chen‐Xia
Zhou, Guo‐Ping
Li, Ning
author_facet Guo, Chen‐Rui
Mao, Yan
Jiang, Feng
Juan, Chen‐Xia
Zhou, Guo‐Ping
Li, Ning
author_sort Guo, Chen‐Rui
collection PubMed
description Evidence has been emerging of the importance of long non‐coding RNAs (lncRNAs) in genome instability. However, no study has established how to classify such lncRNAs linked to genomic instability, and whether that connection poses a therapeutic significance. Here, we established a computational frame derived from mutator hypothesis by combining profiles of lncRNA expression and those of somatic mutations in a tumor genome, and identified 185 candidate lncRNAs associated with genomic instability in lung adenocarcinoma (LUAD). Through further studies, we established a six lncRNA‐based signature, which assigned patients to the high‐ and low‐risk groups with different prognosis. Further validation of this signature was performed in a number of separate cohorts of LUAD patients. In addition, the signature was found closely linked to genomic mutation rates in patients, indicating it could be a useful way to quantify genomic instability. In summary, this research offered a novel method by through which more studies may explore the function of lncRNAs and presented a possible new way for detecting biomarkers associated with genomic instability in cancers.
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spelling pubmed-88170822022-02-08 Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma Guo, Chen‐Rui Mao, Yan Jiang, Feng Juan, Chen‐Xia Zhou, Guo‐Ping Li, Ning Cancer Med Bioinformatics Evidence has been emerging of the importance of long non‐coding RNAs (lncRNAs) in genome instability. However, no study has established how to classify such lncRNAs linked to genomic instability, and whether that connection poses a therapeutic significance. Here, we established a computational frame derived from mutator hypothesis by combining profiles of lncRNA expression and those of somatic mutations in a tumor genome, and identified 185 candidate lncRNAs associated with genomic instability in lung adenocarcinoma (LUAD). Through further studies, we established a six lncRNA‐based signature, which assigned patients to the high‐ and low‐risk groups with different prognosis. Further validation of this signature was performed in a number of separate cohorts of LUAD patients. In addition, the signature was found closely linked to genomic mutation rates in patients, indicating it could be a useful way to quantify genomic instability. In summary, this research offered a novel method by through which more studies may explore the function of lncRNAs and presented a possible new way for detecting biomarkers associated with genomic instability in cancers. John Wiley and Sons Inc. 2021-12-05 /pmc/articles/PMC8817082/ /pubmed/34866362 http://dx.doi.org/10.1002/cam4.4471 Text en © 2021 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Bioinformatics
Guo, Chen‐Rui
Mao, Yan
Jiang, Feng
Juan, Chen‐Xia
Zhou, Guo‐Ping
Li, Ning
Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
title Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
title_full Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
title_fullStr Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
title_full_unstemmed Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
title_short Computational detection of a genome instability‐derived lncRNA signature for predicting the clinical outcome of lung adenocarcinoma
title_sort computational detection of a genome instability‐derived lncrna signature for predicting the clinical outcome of lung adenocarcinoma
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8817082/
https://www.ncbi.nlm.nih.gov/pubmed/34866362
http://dx.doi.org/10.1002/cam4.4471
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