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Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma
BACKGROUND: Endometrial carcinoma (EC) is one of the most common gynecological malignant tumors. In this study, we constructed gene co-expression networks to identify key modules and hub genes involved in the pathogenesis of EC. RESULTS: The MEturquoise module was found to be significantly related t...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8818217/ https://www.ncbi.nlm.nih.gov/pubmed/35123404 http://dx.doi.org/10.1186/s12863-022-01028-y |
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author | Feng, Chong Cui, Lei Jin, Zhen Sun, Lei Wang, Xiaoyan Chi, Xinshu Sun, Qian Lian, Siyu |
author_facet | Feng, Chong Cui, Lei Jin, Zhen Sun, Lei Wang, Xiaoyan Chi, Xinshu Sun, Qian Lian, Siyu |
author_sort | Feng, Chong |
collection | PubMed |
description | BACKGROUND: Endometrial carcinoma (EC) is one of the most common gynecological malignant tumors. In this study, we constructed gene co-expression networks to identify key modules and hub genes involved in the pathogenesis of EC. RESULTS: The MEturquoise module was found to be significantly related to hypertension and the MEbrown module was significantly related to the history of other malignancies. Functional enrichment analysis showed that the MEturquoise module was associated with the GO biological process terms of transcription from RNA polymerase II promoter, positive regulation of male gonad development, endocardial cushion development, and endothelial cell differentiation. The MEbrown module was associated with GO terms DNA binding, epithelial-to-mesenchymal transition, and transcription from RNA polymerase II promoter. A total of 10 hub genes were identified and compared with the available datasets at transcriptional and translational levels. CONCLUSIONS: The identified ceRNAs may play a critical role in the progression and metastasis of EC and are thus candidate therapeutic targets and potential prognostic biomarkers. The two modules constructed further provide a useful reference that will advance understanding of the mechanisms of tumorigenesis in EC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-022-01028-y. |
format | Online Article Text |
id | pubmed-8818217 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-88182172022-02-07 Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma Feng, Chong Cui, Lei Jin, Zhen Sun, Lei Wang, Xiaoyan Chi, Xinshu Sun, Qian Lian, Siyu BMC Genom Data Research BACKGROUND: Endometrial carcinoma (EC) is one of the most common gynecological malignant tumors. In this study, we constructed gene co-expression networks to identify key modules and hub genes involved in the pathogenesis of EC. RESULTS: The MEturquoise module was found to be significantly related to hypertension and the MEbrown module was significantly related to the history of other malignancies. Functional enrichment analysis showed that the MEturquoise module was associated with the GO biological process terms of transcription from RNA polymerase II promoter, positive regulation of male gonad development, endocardial cushion development, and endothelial cell differentiation. The MEbrown module was associated with GO terms DNA binding, epithelial-to-mesenchymal transition, and transcription from RNA polymerase II promoter. A total of 10 hub genes were identified and compared with the available datasets at transcriptional and translational levels. CONCLUSIONS: The identified ceRNAs may play a critical role in the progression and metastasis of EC and are thus candidate therapeutic targets and potential prognostic biomarkers. The two modules constructed further provide a useful reference that will advance understanding of the mechanisms of tumorigenesis in EC. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12863-022-01028-y. BioMed Central 2022-02-06 /pmc/articles/PMC8818217/ /pubmed/35123404 http://dx.doi.org/10.1186/s12863-022-01028-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Feng, Chong Cui, Lei Jin, Zhen Sun, Lei Wang, Xiaoyan Chi, Xinshu Sun, Qian Lian, Siyu Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma |
title | Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma |
title_full | Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma |
title_fullStr | Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma |
title_full_unstemmed | Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma |
title_short | Construction and comprehensive analysis of the competing endogenous RNA network in endometrial adenocarcinoma |
title_sort | construction and comprehensive analysis of the competing endogenous rna network in endometrial adenocarcinoma |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8818217/ https://www.ncbi.nlm.nih.gov/pubmed/35123404 http://dx.doi.org/10.1186/s12863-022-01028-y |
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