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Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds

1. Recent advances in digital data collection have spurred accumulation of immense quantities of data that have potential to lead to remarkable ecological insight, but that also present analytic challenges. In the case of biologging data from birds, common analytical approaches to classifying moveme...

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Autores principales: Bergen, Silas, Huso, Manuela M., Duerr, Adam E., Braham, Melissa A., Katzner, Todd E., Schmuecker, Sara, Miller, Tricia A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8819645/
https://www.ncbi.nlm.nih.gov/pubmed/35154643
http://dx.doi.org/10.1002/ece3.8395
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author Bergen, Silas
Huso, Manuela M.
Duerr, Adam E.
Braham, Melissa A.
Katzner, Todd E.
Schmuecker, Sara
Miller, Tricia A.
author_facet Bergen, Silas
Huso, Manuela M.
Duerr, Adam E.
Braham, Melissa A.
Katzner, Todd E.
Schmuecker, Sara
Miller, Tricia A.
author_sort Bergen, Silas
collection PubMed
description 1. Recent advances in digital data collection have spurred accumulation of immense quantities of data that have potential to lead to remarkable ecological insight, but that also present analytic challenges. In the case of biologging data from birds, common analytical approaches to classifying movement behaviors are largely inappropriate for these massive data sets. 2. We apply a framework for using K‐means clustering to classify bird behavior using points from short time interval GPS tracks. K‐means clustering is a well‐known and computationally efficient statistical tool that has been used in animal movement studies primarily for clustering segments of consecutive points. To illustrate the utility of our approach, we apply K‐means clustering to six focal variables derived from GPS data collected at 1–11 s intervals from free‐flying bald eagles (Haliaeetus leucocephalus) throughout the state of Iowa, USA. We illustrate how these data can be used to identify behaviors and life‐stage‐ and age‐related variation in behavior. 3. After filtering for data quality, the K‐means algorithm identified four clusters in >2 million GPS telemetry data points. These four clusters corresponded to three movement states: ascending, flapping, and gliding flight; and one non‐moving state: perching. Mapping these states illustrated how they corresponded tightly to expectations derived from natural history observations; for example, long periods of ascending flight were often followed by long gliding descents, birds alternated between flapping and gliding flight. 4. The K‐means clustering approach we applied is both an efficient and effective mechanism to classify and interpret short‐interval biologging data to understand movement behaviors. Furthermore, because it can apply to an abundance of very short, irregular, and high‐dimensional movement data, it provides insight into small‐scale variation in behavior that would not be possible with many other analytical approaches.
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spelling pubmed-88196452022-02-11 Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds Bergen, Silas Huso, Manuela M. Duerr, Adam E. Braham, Melissa A. Katzner, Todd E. Schmuecker, Sara Miller, Tricia A. Ecol Evol Research Articles 1. Recent advances in digital data collection have spurred accumulation of immense quantities of data that have potential to lead to remarkable ecological insight, but that also present analytic challenges. In the case of biologging data from birds, common analytical approaches to classifying movement behaviors are largely inappropriate for these massive data sets. 2. We apply a framework for using K‐means clustering to classify bird behavior using points from short time interval GPS tracks. K‐means clustering is a well‐known and computationally efficient statistical tool that has been used in animal movement studies primarily for clustering segments of consecutive points. To illustrate the utility of our approach, we apply K‐means clustering to six focal variables derived from GPS data collected at 1–11 s intervals from free‐flying bald eagles (Haliaeetus leucocephalus) throughout the state of Iowa, USA. We illustrate how these data can be used to identify behaviors and life‐stage‐ and age‐related variation in behavior. 3. After filtering for data quality, the K‐means algorithm identified four clusters in >2 million GPS telemetry data points. These four clusters corresponded to three movement states: ascending, flapping, and gliding flight; and one non‐moving state: perching. Mapping these states illustrated how they corresponded tightly to expectations derived from natural history observations; for example, long periods of ascending flight were often followed by long gliding descents, birds alternated between flapping and gliding flight. 4. The K‐means clustering approach we applied is both an efficient and effective mechanism to classify and interpret short‐interval biologging data to understand movement behaviors. Furthermore, because it can apply to an abundance of very short, irregular, and high‐dimensional movement data, it provides insight into small‐scale variation in behavior that would not be possible with many other analytical approaches. John Wiley and Sons Inc. 2022-02-07 /pmc/articles/PMC8819645/ /pubmed/35154643 http://dx.doi.org/10.1002/ece3.8395 Text en © 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This article has been contributed to by US Government employees and their work is in the public domain in the USA. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Bergen, Silas
Huso, Manuela M.
Duerr, Adam E.
Braham, Melissa A.
Katzner, Todd E.
Schmuecker, Sara
Miller, Tricia A.
Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds
title Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds
title_full Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds
title_fullStr Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds
title_full_unstemmed Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds
title_short Classifying behavior from short‐interval biologging data: An example with GPS tracking of birds
title_sort classifying behavior from short‐interval biologging data: an example with gps tracking of birds
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8819645/
https://www.ncbi.nlm.nih.gov/pubmed/35154643
http://dx.doi.org/10.1002/ece3.8395
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