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Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae)
Carya laciniosa (F.Michx.) G.Don is a slow-growing valuable tree in the family Juglandaceae. In this research, we first reported the chloroplast genome sequence of C. laciniosa. The chloroplast genome was a circular form with 160,832 bp in size, comprising four subregions: a large single-copy (LSC)...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8820796/ https://www.ncbi.nlm.nih.gov/pubmed/35141403 http://dx.doi.org/10.1080/23802359.2021.1906178 |
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author | Zhai, Min Jia, Xiao-Dong Zhang, Ji-Yu Guo, Zhong-Ren Xuan, Ji-Ping |
author_facet | Zhai, Min Jia, Xiao-Dong Zhang, Ji-Yu Guo, Zhong-Ren Xuan, Ji-Ping |
author_sort | Zhai, Min |
collection | PubMed |
description | Carya laciniosa (F.Michx.) G.Don is a slow-growing valuable tree in the family Juglandaceae. In this research, we first reported the chloroplast genome sequence of C. laciniosa. The chloroplast genome was a circular form with 160,832 bp in size, comprising four subregions: a large single-copy (LSC) region of 90,065 bp, a small single-copy (SSC) region of 18,791 bp, and two copies of inverted repeats (IRs; IRa and IRb) of 25,988 bp each. A total of 132 genes were annotated in the chloroplast genome of C. laciniosa, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the whole genome was 36.14%. Phylogenetic analysis suggested that C. laciniosa was closely related to C. ovata. |
format | Online Article Text |
id | pubmed-8820796 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88207962022-02-08 Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) Zhai, Min Jia, Xiao-Dong Zhang, Ji-Yu Guo, Zhong-Ren Xuan, Ji-Ping Mitochondrial DNA B Resour Mitogenome Announcement Carya laciniosa (F.Michx.) G.Don is a slow-growing valuable tree in the family Juglandaceae. In this research, we first reported the chloroplast genome sequence of C. laciniosa. The chloroplast genome was a circular form with 160,832 bp in size, comprising four subregions: a large single-copy (LSC) region of 90,065 bp, a small single-copy (SSC) region of 18,791 bp, and two copies of inverted repeats (IRs; IRa and IRb) of 25,988 bp each. A total of 132 genes were annotated in the chloroplast genome of C. laciniosa, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the whole genome was 36.14%. Phylogenetic analysis suggested that C. laciniosa was closely related to C. ovata. Taylor & Francis 2021-04-09 /pmc/articles/PMC8820796/ /pubmed/35141403 http://dx.doi.org/10.1080/23802359.2021.1906178 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhai, Min Jia, Xiao-Dong Zhang, Ji-Yu Guo, Zhong-Ren Xuan, Ji-Ping Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) |
title | Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) |
title_full | Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) |
title_short | Characterization of the complete chloroplast genome of Carya laciniosa (F.Michx.) G.Don (Juglandaceae) |
title_sort | characterization of the complete chloroplast genome of carya laciniosa (f.michx.) g.don (juglandaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8820796/ https://www.ncbi.nlm.nih.gov/pubmed/35141403 http://dx.doi.org/10.1080/23802359.2021.1906178 |
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