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The complete chloroplast genome of Ficus pumila, a functional plant in East Asia
Ficus pumila L. is a climbing fig commonly used as an ornamental plant. In this study, we sequenced and assembled the complete chloroplast genome of F. pumila. The complete chloroplast genome of F. pumila is 160,248 bp in length which includes a pair of inverted repeats (IRs) of 25,871 bp separated...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8820821/ https://www.ncbi.nlm.nih.gov/pubmed/35141411 http://dx.doi.org/10.1080/23802359.2022.2031328 |
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author | Liang, DanYang Lv, Huqiang Liao, Jianxiong |
author_facet | Liang, DanYang Lv, Huqiang Liao, Jianxiong |
author_sort | Liang, DanYang |
collection | PubMed |
description | Ficus pumila L. is a climbing fig commonly used as an ornamental plant. In this study, we sequenced and assembled the complete chloroplast genome of F. pumila. The complete chloroplast genome of F. pumila is 160,248 bp in length which includes a pair of inverted repeats (IRs) of 25,871 bp separated by a large single-copy (LSC) region of 88,405 bp and a small single-copy (SSC) region of 20,101 bp. The overall guanine–cytosine (GC) content of F. pumila cp genome is 35.98%, while the corresponding values of LSC, SSC, and IR sequences are 33.65, 29.05, and 42.65%, respectively. The phylogenetic tree was shown to be consistent with the traditional morphology-based taxonomy of Moraceae. Five plants from the genus Ficus formed a well-supported monophyletic clade with 100% bootstrap value, and F. pumila is closely related to F. hirta, F. carica, and F. racemosa, with a support value of 97%. The complete chloroplast of F. pumila contributes to the growing number of chloroplast genomes for phylogenetic and evolutionary studies in Moraceae. |
format | Online Article Text |
id | pubmed-8820821 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-88208212022-02-08 The complete chloroplast genome of Ficus pumila, a functional plant in East Asia Liang, DanYang Lv, Huqiang Liao, Jianxiong Mitochondrial DNA B Resour MitoGenome Announcemen Ficus pumila L. is a climbing fig commonly used as an ornamental plant. In this study, we sequenced and assembled the complete chloroplast genome of F. pumila. The complete chloroplast genome of F. pumila is 160,248 bp in length which includes a pair of inverted repeats (IRs) of 25,871 bp separated by a large single-copy (LSC) region of 88,405 bp and a small single-copy (SSC) region of 20,101 bp. The overall guanine–cytosine (GC) content of F. pumila cp genome is 35.98%, while the corresponding values of LSC, SSC, and IR sequences are 33.65, 29.05, and 42.65%, respectively. The phylogenetic tree was shown to be consistent with the traditional morphology-based taxonomy of Moraceae. Five plants from the genus Ficus formed a well-supported monophyletic clade with 100% bootstrap value, and F. pumila is closely related to F. hirta, F. carica, and F. racemosa, with a support value of 97%. The complete chloroplast of F. pumila contributes to the growing number of chloroplast genomes for phylogenetic and evolutionary studies in Moraceae. Taylor & Francis 2022-02-03 /pmc/articles/PMC8820821/ /pubmed/35141411 http://dx.doi.org/10.1080/23802359.2022.2031328 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | MitoGenome Announcemen Liang, DanYang Lv, Huqiang Liao, Jianxiong The complete chloroplast genome of Ficus pumila, a functional plant in East Asia |
title | The complete chloroplast genome of Ficus pumila, a functional plant in East Asia |
title_full | The complete chloroplast genome of Ficus pumila, a functional plant in East Asia |
title_fullStr | The complete chloroplast genome of Ficus pumila, a functional plant in East Asia |
title_full_unstemmed | The complete chloroplast genome of Ficus pumila, a functional plant in East Asia |
title_short | The complete chloroplast genome of Ficus pumila, a functional plant in East Asia |
title_sort | complete chloroplast genome of ficus pumila, a functional plant in east asia |
topic | MitoGenome Announcemen |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8820821/ https://www.ncbi.nlm.nih.gov/pubmed/35141411 http://dx.doi.org/10.1080/23802359.2022.2031328 |
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