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A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC
Renal cell carcinoma (RCC) is the third common solid tumor in the urinary system with a high distant metastasis rate. The five-year survival rate of RCC has reached 75%, benefiting from the emergence and update of multiple treatments, while its pathogenesis and prognostic markers are still unclear....
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8821820/ https://www.ncbi.nlm.nih.gov/pubmed/35145542 http://dx.doi.org/10.3389/fgene.2021.755706 |
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author | Li, Weiquan Meng, Xiangui Yuan, Hongwei Xiao, Wen Zhang, Xiaoping |
author_facet | Li, Weiquan Meng, Xiangui Yuan, Hongwei Xiao, Wen Zhang, Xiaoping |
author_sort | Li, Weiquan |
collection | PubMed |
description | Renal cell carcinoma (RCC) is the third common solid tumor in the urinary system with a high distant metastasis rate. The five-year survival rate of RCC has reached 75%, benefiting from the emergence and update of multiple treatments, while its pathogenesis and prognostic markers are still unclear. In this study, we committed to explore a prognostic ceRNA network that could participate in the development of RCC and had not been studied yet. We screened nine immune-related hub genes (AGER, HAMP, LAT, LTB4R, NR3C2, SEMA3D, SEMA3G, SLC11A1, and VAV3) using data of The Cancer Genome Atlas Kidney Clear Cell Carcinoma database (TCGA-KIRC) through survival analysis and the cox proportional hazard model. Next, we successfully constructed a ceRNA network of two mRNA (NR3C2 and VAV3), miRNA (hsa-miR-186-5p), and lncRNA (NNT-AS1) for ccRCC based on numerous online bioinformatics tools and Cytoscape. Finally, we predicted five potential drugs (clemizole, pentolonium, dioxybenzone, Prestwick-691, and metoprolol) based on the above results. |
format | Online Article Text |
id | pubmed-8821820 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-88218202022-02-09 A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC Li, Weiquan Meng, Xiangui Yuan, Hongwei Xiao, Wen Zhang, Xiaoping Front Genet Genetics Renal cell carcinoma (RCC) is the third common solid tumor in the urinary system with a high distant metastasis rate. The five-year survival rate of RCC has reached 75%, benefiting from the emergence and update of multiple treatments, while its pathogenesis and prognostic markers are still unclear. In this study, we committed to explore a prognostic ceRNA network that could participate in the development of RCC and had not been studied yet. We screened nine immune-related hub genes (AGER, HAMP, LAT, LTB4R, NR3C2, SEMA3D, SEMA3G, SLC11A1, and VAV3) using data of The Cancer Genome Atlas Kidney Clear Cell Carcinoma database (TCGA-KIRC) through survival analysis and the cox proportional hazard model. Next, we successfully constructed a ceRNA network of two mRNA (NR3C2 and VAV3), miRNA (hsa-miR-186-5p), and lncRNA (NNT-AS1) for ccRCC based on numerous online bioinformatics tools and Cytoscape. Finally, we predicted five potential drugs (clemizole, pentolonium, dioxybenzone, Prestwick-691, and metoprolol) based on the above results. Frontiers Media S.A. 2022-01-25 /pmc/articles/PMC8821820/ /pubmed/35145542 http://dx.doi.org/10.3389/fgene.2021.755706 Text en Copyright © 2022 Li, Meng, Yuan, Xiao and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Li, Weiquan Meng, Xiangui Yuan, Hongwei Xiao, Wen Zhang, Xiaoping A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC |
title | A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC |
title_full | A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC |
title_fullStr | A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC |
title_full_unstemmed | A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC |
title_short | A Novel Immune-Related ceRNA Network and Relative Potential Therapeutic Drug Prediction in ccRCC |
title_sort | novel immune-related cerna network and relative potential therapeutic drug prediction in ccrcc |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8821820/ https://www.ncbi.nlm.nih.gov/pubmed/35145542 http://dx.doi.org/10.3389/fgene.2021.755706 |
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