Cargando…

SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data

One of the impacts of the coronavirus disease 2019 (COVID-19) pandemic has been a push for researchers to better exploit synthetic data and accelerate the design, analysis, and modeling of clinical trials. The unprecedented clinical efforts caused by COVID-19’s emergence will certainly boost future...

Descripción completa

Detalles Bibliográficos
Autores principales: Khorchani, Takoua, Gadiya, Yojana, Witt, Gesa, Lanzillotta, Delia, Claussen, Carsten, Zaliani, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825316/
https://www.ncbi.nlm.nih.gov/pubmed/35156066
http://dx.doi.org/10.1016/j.patter.2022.100453
_version_ 1784647184321347584
author Khorchani, Takoua
Gadiya, Yojana
Witt, Gesa
Lanzillotta, Delia
Claussen, Carsten
Zaliani, Andrea
author_facet Khorchani, Takoua
Gadiya, Yojana
Witt, Gesa
Lanzillotta, Delia
Claussen, Carsten
Zaliani, Andrea
author_sort Khorchani, Takoua
collection PubMed
description One of the impacts of the coronavirus disease 2019 (COVID-19) pandemic has been a push for researchers to better exploit synthetic data and accelerate the design, analysis, and modeling of clinical trials. The unprecedented clinical efforts caused by COVID-19’s emergence will certainly boost future robust and innovative approaches of statistical sciences applied to clinical fields. Here, we report the development of SASC, a simple but efficient approach to generate COVID-19-related synthetic clinical data through a web application. SASC takes basic summary statistics for each group of patients and attempts to generate single variables according to internal correlations. To assess the “reliability” of the results, statistical comparisons with Synthea, a known synthetic patient generator tool, and, more importantly, with clinical data of real COVID-19 patients are provided. The source code and web application are available on GitHub, Zenodo, and Mendeley Data.
format Online
Article
Text
id pubmed-8825316
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-88253162022-02-09 SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data Khorchani, Takoua Gadiya, Yojana Witt, Gesa Lanzillotta, Delia Claussen, Carsten Zaliani, Andrea Patterns (N Y) Descriptor One of the impacts of the coronavirus disease 2019 (COVID-19) pandemic has been a push for researchers to better exploit synthetic data and accelerate the design, analysis, and modeling of clinical trials. The unprecedented clinical efforts caused by COVID-19’s emergence will certainly boost future robust and innovative approaches of statistical sciences applied to clinical fields. Here, we report the development of SASC, a simple but efficient approach to generate COVID-19-related synthetic clinical data through a web application. SASC takes basic summary statistics for each group of patients and attempts to generate single variables according to internal correlations. To assess the “reliability” of the results, statistical comparisons with Synthea, a known synthetic patient generator tool, and, more importantly, with clinical data of real COVID-19 patients are provided. The source code and web application are available on GitHub, Zenodo, and Mendeley Data. Elsevier 2022-02-09 /pmc/articles/PMC8825316/ /pubmed/35156066 http://dx.doi.org/10.1016/j.patter.2022.100453 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Descriptor
Khorchani, Takoua
Gadiya, Yojana
Witt, Gesa
Lanzillotta, Delia
Claussen, Carsten
Zaliani, Andrea
SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
title SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
title_full SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
title_fullStr SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
title_full_unstemmed SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
title_short SASC: A simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from COVID-19 clinical data
title_sort sasc: a simple approach to synthetic cohorts for generating longitudinal observational patient cohorts from covid-19 clinical data
topic Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825316/
https://www.ncbi.nlm.nih.gov/pubmed/35156066
http://dx.doi.org/10.1016/j.patter.2022.100453
work_keys_str_mv AT khorchanitakoua sascasimpleapproachtosyntheticcohortsforgeneratinglongitudinalobservationalpatientcohortsfromcovid19clinicaldata
AT gadiyayojana sascasimpleapproachtosyntheticcohortsforgeneratinglongitudinalobservationalpatientcohortsfromcovid19clinicaldata
AT wittgesa sascasimpleapproachtosyntheticcohortsforgeneratinglongitudinalobservationalpatientcohortsfromcovid19clinicaldata
AT lanzillottadelia sascasimpleapproachtosyntheticcohortsforgeneratinglongitudinalobservationalpatientcohortsfromcovid19clinicaldata
AT claussencarsten sascasimpleapproachtosyntheticcohortsforgeneratinglongitudinalobservationalpatientcohortsfromcovid19clinicaldata
AT zalianiandrea sascasimpleapproachtosyntheticcohortsforgeneratinglongitudinalobservationalpatientcohortsfromcovid19clinicaldata