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Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments

Recent studies have suggested that species of the Kazachstania genus may be interesting models of yeast domestication. Among these, Kazachstania barnettii has been isolated from various microbially transformed foodstuffs such as sourdough bread and kefir. In the present work, we sequence, assemble,...

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Autores principales: Devillers, Hugo, Sarilar, Véronique, Grondin, Cécile, Sterck, Lieven, Segond, Diego, Jacques, Noémie, Sicard, Delphine, Casaregola, Serge, Tinsley, Colin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825440/
https://www.ncbi.nlm.nih.gov/pubmed/35106561
http://dx.doi.org/10.1093/gbe/evac007
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author Devillers, Hugo
Sarilar, Véronique
Grondin, Cécile
Sterck, Lieven
Segond, Diego
Jacques, Noémie
Sicard, Delphine
Casaregola, Serge
Tinsley, Colin
author_facet Devillers, Hugo
Sarilar, Véronique
Grondin, Cécile
Sterck, Lieven
Segond, Diego
Jacques, Noémie
Sicard, Delphine
Casaregola, Serge
Tinsley, Colin
author_sort Devillers, Hugo
collection PubMed
description Recent studies have suggested that species of the Kazachstania genus may be interesting models of yeast domestication. Among these, Kazachstania barnettii has been isolated from various microbially transformed foodstuffs such as sourdough bread and kefir. In the present work, we sequence, assemble, and annotate the complete genomes of two K. barnettii strains: CLIB 433, being one of the two reference strains for K. barnettii that was isolated as a spoilage organism in soft drink, and CLIB 1767, recently isolated from artisan bread-making sourdough. Both assemblies are of high quality with N50 statistics greater than 1.3 Mb and BUSCO score greater than 99%. An extensive comparison of the two obtained genomes revealed very few differences between the two K. barnettii strains, considering both genome structure and gene content. The proposed genome assemblies will constitute valuable references for future comparative genomic, population genomic, or transcriptomic studies of the K. barnettii species.
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spelling pubmed-88254402022-02-09 Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments Devillers, Hugo Sarilar, Véronique Grondin, Cécile Sterck, Lieven Segond, Diego Jacques, Noémie Sicard, Delphine Casaregola, Serge Tinsley, Colin Genome Biol Evol Genome Report Recent studies have suggested that species of the Kazachstania genus may be interesting models of yeast domestication. Among these, Kazachstania barnettii has been isolated from various microbially transformed foodstuffs such as sourdough bread and kefir. In the present work, we sequence, assemble, and annotate the complete genomes of two K. barnettii strains: CLIB 433, being one of the two reference strains for K. barnettii that was isolated as a spoilage organism in soft drink, and CLIB 1767, recently isolated from artisan bread-making sourdough. Both assemblies are of high quality with N50 statistics greater than 1.3 Mb and BUSCO score greater than 99%. An extensive comparison of the two obtained genomes revealed very few differences between the two K. barnettii strains, considering both genome structure and gene content. The proposed genome assemblies will constitute valuable references for future comparative genomic, population genomic, or transcriptomic studies of the K. barnettii species. Oxford University Press 2022-02-01 /pmc/articles/PMC8825440/ /pubmed/35106561 http://dx.doi.org/10.1093/gbe/evac007 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Genome Report
Devillers, Hugo
Sarilar, Véronique
Grondin, Cécile
Sterck, Lieven
Segond, Diego
Jacques, Noémie
Sicard, Delphine
Casaregola, Serge
Tinsley, Colin
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
title Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
title_full Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
title_fullStr Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
title_full_unstemmed Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
title_short Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
title_sort whole-genome sequences of two kazachstania barnettii strains isolated from anthropic environments
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825440/
https://www.ncbi.nlm.nih.gov/pubmed/35106561
http://dx.doi.org/10.1093/gbe/evac007
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