Cargando…
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments
Recent studies have suggested that species of the Kazachstania genus may be interesting models of yeast domestication. Among these, Kazachstania barnettii has been isolated from various microbially transformed foodstuffs such as sourdough bread and kefir. In the present work, we sequence, assemble,...
Autores principales: | , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825440/ https://www.ncbi.nlm.nih.gov/pubmed/35106561 http://dx.doi.org/10.1093/gbe/evac007 |
_version_ | 1784647209131704320 |
---|---|
author | Devillers, Hugo Sarilar, Véronique Grondin, Cécile Sterck, Lieven Segond, Diego Jacques, Noémie Sicard, Delphine Casaregola, Serge Tinsley, Colin |
author_facet | Devillers, Hugo Sarilar, Véronique Grondin, Cécile Sterck, Lieven Segond, Diego Jacques, Noémie Sicard, Delphine Casaregola, Serge Tinsley, Colin |
author_sort | Devillers, Hugo |
collection | PubMed |
description | Recent studies have suggested that species of the Kazachstania genus may be interesting models of yeast domestication. Among these, Kazachstania barnettii has been isolated from various microbially transformed foodstuffs such as sourdough bread and kefir. In the present work, we sequence, assemble, and annotate the complete genomes of two K. barnettii strains: CLIB 433, being one of the two reference strains for K. barnettii that was isolated as a spoilage organism in soft drink, and CLIB 1767, recently isolated from artisan bread-making sourdough. Both assemblies are of high quality with N50 statistics greater than 1.3 Mb and BUSCO score greater than 99%. An extensive comparison of the two obtained genomes revealed very few differences between the two K. barnettii strains, considering both genome structure and gene content. The proposed genome assemblies will constitute valuable references for future comparative genomic, population genomic, or transcriptomic studies of the K. barnettii species. |
format | Online Article Text |
id | pubmed-8825440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-88254402022-02-09 Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments Devillers, Hugo Sarilar, Véronique Grondin, Cécile Sterck, Lieven Segond, Diego Jacques, Noémie Sicard, Delphine Casaregola, Serge Tinsley, Colin Genome Biol Evol Genome Report Recent studies have suggested that species of the Kazachstania genus may be interesting models of yeast domestication. Among these, Kazachstania barnettii has been isolated from various microbially transformed foodstuffs such as sourdough bread and kefir. In the present work, we sequence, assemble, and annotate the complete genomes of two K. barnettii strains: CLIB 433, being one of the two reference strains for K. barnettii that was isolated as a spoilage organism in soft drink, and CLIB 1767, recently isolated from artisan bread-making sourdough. Both assemblies are of high quality with N50 statistics greater than 1.3 Mb and BUSCO score greater than 99%. An extensive comparison of the two obtained genomes revealed very few differences between the two K. barnettii strains, considering both genome structure and gene content. The proposed genome assemblies will constitute valuable references for future comparative genomic, population genomic, or transcriptomic studies of the K. barnettii species. Oxford University Press 2022-02-01 /pmc/articles/PMC8825440/ /pubmed/35106561 http://dx.doi.org/10.1093/gbe/evac007 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Genome Report Devillers, Hugo Sarilar, Véronique Grondin, Cécile Sterck, Lieven Segond, Diego Jacques, Noémie Sicard, Delphine Casaregola, Serge Tinsley, Colin Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments |
title | Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments |
title_full | Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments |
title_fullStr | Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments |
title_full_unstemmed | Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments |
title_short | Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments |
title_sort | whole-genome sequences of two kazachstania barnettii strains isolated from anthropic environments |
topic | Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825440/ https://www.ncbi.nlm.nih.gov/pubmed/35106561 http://dx.doi.org/10.1093/gbe/evac007 |
work_keys_str_mv | AT devillershugo wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT sarilarveronique wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT grondincecile wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT stercklieven wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT segonddiego wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT jacquesnoemie wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT sicarddelphine wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT casaregolaserge wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments AT tinsleycolin wholegenomesequencesoftwokazachstaniabarnettiistrainsisolatedfromanthropicenvironments |