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Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer

BACKGROUND: The tumor immune environment plays a critical role in lung cancer initiation and prognosis. Therefore, understanding how the tumor immune environment impacts the overall survival (OS) of patients with advanced lung cancer post immunotherapy is of great importance. In this article, we aim...

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Autores principales: Guo, Guangran, Yang, Longjun, Wen, Yingsheng, Wang, Gongming, Zhang, Rusi, Zhao, Dechang, Huang, Zirui, Zhang, Xuewen, Lin, Yongbin, Zhang, Lanjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AME Publishing Company 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825544/
https://www.ncbi.nlm.nih.gov/pubmed/35242860
http://dx.doi.org/10.21037/atm-21-6043
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author Guo, Guangran
Yang, Longjun
Wen, Yingsheng
Wang, Gongming
Zhang, Rusi
Zhao, Dechang
Huang, Zirui
Zhang, Xuewen
Lin, Yongbin
Zhang, Lanjun
author_facet Guo, Guangran
Yang, Longjun
Wen, Yingsheng
Wang, Gongming
Zhang, Rusi
Zhao, Dechang
Huang, Zirui
Zhang, Xuewen
Lin, Yongbin
Zhang, Lanjun
author_sort Guo, Guangran
collection PubMed
description BACKGROUND: The tumor immune environment plays a critical role in lung cancer initiation and prognosis. Therefore, understanding how the tumor immune environment impacts the overall survival (OS) of patients with advanced lung cancer post immunotherapy is of great importance. In this article, we aimed to identify the immune components of lung cancer and develop an immune prognostic signature to predict OS. METHODS: Differentially expressed immune-related genes were calculated between tumor and normal tissues using expression data from The Cancer Genome Atlas (TCGA) database. Then univariate Cox regression analysis was conducted to select prognosis-related genes and the prognostic risk model was constructed by multivariate Cox regression analysis. Patient risk scores were calculated, and a clinical correlation analysis was performed within the risk model. In addition, immune cell infiltration patterns were identified to find the immune cell subtypes related to prognosis RESULTS: A gene model consisting of 12 immune-related genes was used as our signature. The model showed that the high-risk group experienced a shorter survival time, with an area under the receiver operating characteristic (ROC) curve (AUC) of 0.733. High-risk immune genes, such as S100 calcium binding protein A16 (S100A16) and angiopoietin-like 4 (ANGPTL4), were associated with more malignant clinical manifestations. Further, we discovered that extensive infiltration of B cells, dendritic cells, and mast cells indicated a favorable prognosis. CONCLUSIONS: The signature developed in this paper could be an effective model for estimating OS in lung cancer patients, and the immune cell infiltration analysis of the tumor immune microenvironment could shed light on more effective treatment in clinical practice.
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spelling pubmed-88255442022-03-02 Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer Guo, Guangran Yang, Longjun Wen, Yingsheng Wang, Gongming Zhang, Rusi Zhao, Dechang Huang, Zirui Zhang, Xuewen Lin, Yongbin Zhang, Lanjun Ann Transl Med Original Article BACKGROUND: The tumor immune environment plays a critical role in lung cancer initiation and prognosis. Therefore, understanding how the tumor immune environment impacts the overall survival (OS) of patients with advanced lung cancer post immunotherapy is of great importance. In this article, we aimed to identify the immune components of lung cancer and develop an immune prognostic signature to predict OS. METHODS: Differentially expressed immune-related genes were calculated between tumor and normal tissues using expression data from The Cancer Genome Atlas (TCGA) database. Then univariate Cox regression analysis was conducted to select prognosis-related genes and the prognostic risk model was constructed by multivariate Cox regression analysis. Patient risk scores were calculated, and a clinical correlation analysis was performed within the risk model. In addition, immune cell infiltration patterns were identified to find the immune cell subtypes related to prognosis RESULTS: A gene model consisting of 12 immune-related genes was used as our signature. The model showed that the high-risk group experienced a shorter survival time, with an area under the receiver operating characteristic (ROC) curve (AUC) of 0.733. High-risk immune genes, such as S100 calcium binding protein A16 (S100A16) and angiopoietin-like 4 (ANGPTL4), were associated with more malignant clinical manifestations. Further, we discovered that extensive infiltration of B cells, dendritic cells, and mast cells indicated a favorable prognosis. CONCLUSIONS: The signature developed in this paper could be an effective model for estimating OS in lung cancer patients, and the immune cell infiltration analysis of the tumor immune microenvironment could shed light on more effective treatment in clinical practice. AME Publishing Company 2022-01 /pmc/articles/PMC8825544/ /pubmed/35242860 http://dx.doi.org/10.21037/atm-21-6043 Text en 2022 Annals of Translational Medicine. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Original Article
Guo, Guangran
Yang, Longjun
Wen, Yingsheng
Wang, Gongming
Zhang, Rusi
Zhao, Dechang
Huang, Zirui
Zhang, Xuewen
Lin, Yongbin
Zhang, Lanjun
Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
title Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
title_full Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
title_fullStr Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
title_full_unstemmed Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
title_short Analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
title_sort analysis of the tumor immune environment identifies an immune gene set–based prognostic signature in non-small cell lung cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8825544/
https://www.ncbi.nlm.nih.gov/pubmed/35242860
http://dx.doi.org/10.21037/atm-21-6043
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